PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01032911001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 466aa MW: 52181.7 Da PI: 9.0525 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 101.4 | 1.5e-31 | 137 | 214 | 3 | 74 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......e 74 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++ GSVIVT01032911001 137 GGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLQMPPGNFVqshqpmI 214 78*************************************************************999998773221111 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 32.019 | 138 | 196 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.4E-28 | 138 | 225 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 466 aa Download sequence Send to blast |
MILFSWFACM NIFYGMRVHQ FVDPCDGDSL TMPFVVVDKA LKVHSNSCAV YLYLSYQLTI 60 NGLINLICYQ KHRTFSVHIV LRNCMKKSHA TNSREADFSA KLEGDESDAR IAKNSSTSTP 120 WLRLKDPRIV RVSRAYGGKD RHSKVCTVRG LRDRRVRLSV PTAIQLYDLQ DRLGLNQPSK 180 VVDWLLNAAK HEIDELPPLQ MPPGNFVQSH QPMITSLEVG ASQFNKEELK ISNGIDWEDP 240 SGLPRSSFWG SNAFLRAKSK EVPRENVNEK VNWMKRNEEG GQVSSNIFPP RTNQSSLPGL 300 LSSSMPYGPY YHLEPSNLSL STLGSHGLTS QTEDLHNFSV VPLPSSLSLT SGSQVLVCPP 360 GATQSYFPPH VPTSMEFDPR QINHFQLLSS SSQNILPNAL TPPLYSIGQP VRPLHLSMAH 420 KIHHSQSING GHPNKDKCDR KLKKMLENMI YFQCCVSDLV TARLV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-18 | 143 | 197 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-18 | 143 | 197 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Vvi.10335 | 0.0 | bud| inflorescence| leaf |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM486098 | 0.0 | AM486098.2 Vitis vinifera contig VV78X124714.9, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002277074.1 | 0.0 | PREDICTED: transcription factor TCP13 | ||||
TrEMBL | A0A438HE34 | 0.0 | A0A438HE34_VITVI; Transcription factor TCP13 | ||||
TrEMBL | F6H492 | 0.0 | F6H492_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0068g00330.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02150.1 | 3e-46 | plastid transcription factor 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01032911001 |