PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032662001
Common NameLOC100263918, VIT_13s0067g03130
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 309aa    MW: 34255.2 Da    PI: 7.2192
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032662001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.23.3e-28175235259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        dD ++WrKYGqKe+ gs++prsYYrCt++   +Cp+kk+v+r ++dp +++itY ++H+++
  GSVIVT01032662001 175 DDNFTWRKYGQKEILGSKYPRSYYRCTHQklyNCPAKKQVQRLEHDPFMFDITYIDDHTCH 235
                        8****************************999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-27170236IPR003657WRKY domain
SuperFamilySSF1182902.09E-25172235IPR003657WRKY domain
SMARTSM007743.3E-37174236IPR003657WRKY domain
PfamPF031061.8E-25175235IPR003657WRKY domain
PROSITE profilePS5081120.254175232IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEETLSHIVR GCKLARELES NIPNLAKQPR MLAKSCDEIM KIFGTAKERL NAQDDHSAYP  60
YMFAQASGME TSGEMQEWLK TSYLQALQAQ YGLTESKVGG IEPVTLSGHP GFELGGRDRE  120
GSARSTGSGG EFQAMEGSDS GNSNSQRLRR RKDDIRKRKE TVAAPRIGNT DIPPDDNFTW  180
RKYGQKEILG SKYPRSYYRC THQKLYNCPA KKQVQRLEHD PFMFDITYID DHTCHKSATA  240
PSGSSSSMVG TGGSTAGPSM VRFGREAEYP VVDLADTMFN SGSSSSNSMD FLFTHTEEKW  300
EPAGDKKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-18157232474Disease resistance protein RRS1
5w3x_D6e-18157232474Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4548750.0AM454875.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X168903.5, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275373.10.0PREDICTED: WRKY transcription factor 55
TrEMBLA0A438E3U80.0A0A438E3U8_VITVI; WRKY transcription factor 55
TrEMBLF6HC340.0F6HC34_VITVI; Uncharacterized protein
STRINGVIT_13s0067g03130.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.19e-55WRKY DNA-binding protein 55