PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01032388001
Common NameVIT_14s0066g00360
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 399aa    MW: 44158.1 Da    PI: 6.2255
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01032388001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM100.62.1e-31551971128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 
                        lp+G++F+P+d +l+ e+L++k+   +      ++++   ++e  +i++++P++Lp  +k++  +++fF+++ ++yatg+rk+r+       
  GSVIVT01032388001  55 LPAGVKFDPSDVQLL-EHLAAKCGVGNgkphvlIDEFIPtLEEDkGICYTHPENLP-GAKKDGGSIHFFHRTTNAYATGQRKRRKihslhgs 144
                        799************.999999876665666553333332444447**********.455667799******************86787777 PP

                NAM  78 .tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                          ++ +W++tgk+k+v++ +g ++g+kk++v+y  +++ +k+ k++Wvmh+y+l
  GSVIVT01032388001 145 tEEHVRWHKTGKTKPVIE-NGVQKGCKKIMVLYksSKKGSKPDKSNWVMHQYHL 197
                        444889************.999***********4434666778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-3740216IPR003441NAC domain
PROSITE profilePS5100530.77755216IPR003441NAC domain
PfamPF023658.6E-1356197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MARTWVVDSR GIARKVKNAT QSFASQIKDC GANRECPNCH HRIDNSDVSH EWPGLPAGVK  60
FDPSDVQLLE HLAAKCGVGN GKPHVLIDEF IPTLEEDKGI CYTHPENLPG AKKDGGSIHF  120
FHRTTNAYAT GQRKRRKIHS LHGSTEEHVR WHKTGKTKPV IENGVQKGCK KIMVLYKSSK  180
KGSKPDKSNW VMHQYHLGTE EDEREDEYVV SKVFYQPQKQ TETNDNIPVI EELDAVTSQT  240
SPRTPKTTTP NPPRSEKSVF CANAGDDSTP HGSAQKAEFV GEASHPNPST DQIENNMEYP  300
LWLAGESQAI EDADQNGLHD SLLCKEIFYP GAPHYDTGLN HGPVIGFSHN MNGIPGDHNA  360
PCGIADLENL ELDTPPDFQL ADLQFGSQDS IFGWLDRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4419780.0AM441978.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X211845.3, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272446.10.0PREDICTED: NAC domain-containing protein 8 isoform X2
TrEMBLF6HUU00.0F6HUU0_VITVI; Uncharacterized protein
STRINGVIT_14s0066g00360.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.15e-95NAC domain containing protein 44