PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01032362001 | ||||||||
Common Name | LOC100255968, VIT_14s0066g00150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GATA | ||||||||
Protein Properties | Length: 368aa MW: 40974.3 Da PI: 7.7657 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49 | 8.6e-16 | 196 | 230 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C+tt+T WR gp+g+k+LC aCG++ k+++ GSVIVT01032362001 196 CAHCHTTETLRWRTGPEGHKSLCDACGIRLEKQRE 230 *****************************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.1E-10 | 190 | 241 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 10.422 | 190 | 223 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.57E-10 | 190 | 230 | No hit | No description |
CDD | cd00202 | 5.36E-8 | 195 | 230 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-11 | 195 | 229 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 3.0E-13 | 196 | 230 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS51525 | 16.722 | 287 | 367 | IPR027353 | NET domain |
Pfam | PF17035 | 3.3E-20 | 296 | 357 | IPR027353 | NET domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 368 aa Download sequence Send to blast |
MSEGSKCVVA SAEHNKVGPN YFGFYVREVA ELLSQDKDFL PCSSQASELS ARTGGQVRDG 60 DKIKHGCDGK EAKSSSSSGS LFSNGIGAGI SDFKNERLKA LLRQSVTSLT QEVDEMLDPV 120 LAIRQIQAHL RYKKHQSRNS NGESDGCAGQ FPCKKRKMSS PNASHISCGS SREGSAFECV 180 DGASSEKRKS NIVKSCAHCH TTETLRWRTG PEGHKSLCDA CGIRLEKQRE PLFCSNTGAE 240 KENGEVNDDL KILLENDCSL VEERVKKYSD ELSGTLGLME QQLEQLLDTV MCQCRPMTRR 300 EKQQLQKMIQ KLPPKNLERA VEIIQRGKLP EIHSDEIHVN LEKEDNATLW RLYYYVEAVE 360 KARKLSR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.10773 | 0.0 | fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM423279 | 0.0 | AM423279.2 Vitis vinifera contig VV78X278779.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010660834.1 | 0.0 | PREDICTED: GATA transcription factor 7 | ||||
Refseq | XP_010660835.1 | 0.0 | PREDICTED: GATA transcription factor 7 | ||||
TrEMBL | D7TWF4 | 0.0 | D7TWF4_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0066g00150.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP9400 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 1e-10 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01032362001 |
Entrez Gene | 100255968 |