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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01032055001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 27599.3 Da PI: 9.9662 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37 | 6.2e-12 | 183 | 228 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k + a++L +AveYIk+Lq GSVIVT01032055001 183 SIAERVRRTRISERMRKLQELFPNM----DKQTNTADMLDLAVEYIKDLQ 228 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.437 | 177 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-15 | 180 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.73E-11 | 181 | 232 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-14 | 182 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-8 | 183 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-11 | 183 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MQKMAFSVIR LNTSGILESF GFTPTREMGN LRAGNSTNVE ANPSVSRLNN QISFSSGLSS 60 CNGLLPKISE IRNENIGLHS PKDGNNSNSR CYISNFTTDS WSDSPFSGLT RMAADNDLKM 120 FSGLNSLEAQ NVDSRYRSLG LTHHLSLPKN FPQITTIEKF LHFQDSVPCK IRAKRGCATH 180 PRSIAERVRR TRISERMRKL QELFPNMDKQ TNTADMLDLA VEYIKDLQKQ VKTLNDTKVK 240 CTCSSI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ384890 | 0.0 | FQ384890.1 Vitis vinifera clone SS0AEB4YB12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003633592.1 | 1e-168 | PREDICTED: transcription factor bHLH130 | ||||
Swissprot | Q66GR3 | 2e-55 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A438J226 | 1e-167 | A0A438J226_VITVI; Transcription factor bHLH130 | ||||
TrEMBL | F6HBA7 | 1e-167 | F6HBA7_VITVI; Uncharacterized protein | ||||
STRING | VIT_13s0064g01290.t01 | 1e-167 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP511 | 15 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 7e-58 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01032055001 |
Publications ? help Back to Top | |||
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