PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031852001
Common NameVIT_03s0063g01450
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 356aa    MW: 40881.2 Da    PI: 7.5722
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031852001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.59e-1727115498
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                 B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                        +l+ s+vl+ +rl++p kf+++ g +   s   tl+ ++g +W v l  +k ++++++  GW eFv+   + +g f++F+++g+s+f  +v 
  GSVIVT01031852001  27 KLIVSSVLQAKRLRIPQKFVKKSGDQ--LSAVTTLTLPNGGVWYVGL--TKADNKFWFYHGWHEFVEYYSIHVGYFLIFRYEGNSNF--NVN 112
                        67889***************999877..788899999**********..**********************************9999..999 PP

                        EE- CS
                 B3  96 vfr 98 
                        +f+
  GSVIVT01031852001 113 IFD 115
                        987 PP
2B373.52.5e-23252342498
                        E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                        +l +s+v+++ +l +p +fae++ +g+   sk ++l++++g++W v++    + +r+ l+kGW eFvk+n+L+egD++vF+l++ ++  l+v
  GSVIVT01031852001 252 ILRRSYVHERFLLHMPSRFAEKYlNGV---SKFIKLQTSDGKQWHVRC--LSGESRVKLSKGWTEFVKDNNLEEGDVCVFELINMEDVVLKV 338
                        57789******************8666...567***************..999999***************************989999999 PP

                        EEE- CS
                 B3  95 kvfr 98 
                        ++fr
  GSVIVT01031852001 339 SIFR 342
                        9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2121117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-2223116IPR015300DNA-binding pseudobarrel domain
CDDcd100173.61E-1723115No hitNo description
PROSITE profilePS5086313.28124117IPR003340B3 DNA binding domain
SMARTSM010199.5E-1125117IPR003340B3 DNA binding domain
PfamPF023621.1E-1327115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-26241342IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-26243343IPR015300DNA-binding pseudobarrel domain
CDDcd100176.07E-25247342No hitNo description
PROSITE profilePS5086315.763249344IPR003340B3 DNA binding domain
SMARTSM010195.1E-17249344IPR003340B3 DNA binding domain
PfamPF023621.7E-21252342IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009029anatomystamen
PO:0007016developmental stagewhole plant flowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MPEQETLDHS HCRRPSSQPT RSLLFYKLIV SSVLQAKRLR IPQKFVKKSG DQLSAVTTLT  60
LPNGGVWYVG LTKADNKFWF YHGWHEFVEY YSIHVGYFLI FRYEGNSNFN VNIFDLTASE  120
INYPSNNLRN SEKTSHGKQC PASDGEEMND DDDSVEILGS ASPVSLRSKV FDECIDQQPL  180
GKNYNENLHL AKDANSLQVT IRSSRDIGIQ FNSSELTNSE CKRWRVVTME EKKRALHAAE  240
MFQPSNPFCR VILRRSYVHE RFLLHMPSRF AEKYLNGVSK FIKLQTSDGK QWHVRCLSGE  300
SRVKLSKGWT EFVKDNNLEE GDVCVFELIN MEDVVLKVSI FRVLDDARVE TQSSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-4321934319142B3 domain-containing transcription factor VRN1
4i1k_B5e-4321934319142B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4305900.0AM430590.2 Vitis vinifera contig VV78X234759.34, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019074382.10.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLD7TPT00.0D7TPT0_VITVI; Uncharacterized protein
STRINGVIT_03s0063g01450.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20511436
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-94B3 family protein