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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01031850001 |
Common Name | VIT_03s0063g01440 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
B3 |
Protein Properties |
Length: 232aa MW: 26142.8 Da PI: 9.7888 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01031850001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 54.2 | 2.6e-17 | 5 | 81 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
++p f+++ g+ s tl+ +sg W v++ +k++++++l++GWkeF ++n+L + +f+vF +dg+++f +vk+f+k
GSVIVT01031850001 5 RIPPAFIKHLAGD--ISDRATLTCSSGGHWGVTV--WKNPDGTYLEDGWKEFMRENNLGDDEFLVFIYDGDMRF--HVKIFEK 81
699****766666..566799*************..**********************************9999..*****97 PP
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2 | B3 | 60.4 | 3e-19 | 142 | 225 | 2 | 89 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
+ +t+s v k +l++pk f ++h + + +++l+++ g++Wev++iy + +r+ l++GW+ Fv++n Lk+g ++ F+l++++
GSVIVT01031850001 142 ECLMTKSCVEKCFLLTIPKAFSQSHFPP--AKLKVVLRNSAGKTWEVNCIY--HAKRHSLSGGWSTFVRENSLKQGGTCRFELVEKNV 225
556788888999999**********744..4459***************55..555588***********************986433 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MTLQRIPPAF IKHLAGDISD RATLTCSSGG HWGVTVWKNP DGTYLEDGWK EFMRENNLGD 60 DEFLVFIYDG DMRFHVKIFE KNGVKRSAPI SDNPTEEETG ASSGKRSRGR PRKYPVGSLQ 120 GPVESSRTQK TRSFTSKFPY FECLMTKSCV EKCFLLTIPK AFSQSHFPPA KLKVVLRNSA 180 GKTWEVNCIY HAKRHSLSGG WSTFVRENSL KQGGTCRFEL VEKNVMQVHV L*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM430590 | 0.0 | AM430590.2 Vitis vinifera contig VV78X234759.34, whole genome shotgun sequence. |