PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031850001
Common NameVIT_03s0063g01440
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family B3
Protein Properties Length: 232aa    MW: 26142.8 Da    PI: 9.7888
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031850001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.22.6e-175811799
                       E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                       ++p  f+++  g+   s   tl+ +sg  W v++  +k++++++l++GWkeF ++n+L + +f+vF +dg+++f  +vk+f+k
  GSVIVT01031850001  5 RIPPAFIKHLAGD--ISDRATLTCSSGGHWGVTV--WKNPDGTYLEDGWKEFMRENNLGDDEFLVFIYDGDMRF--HVKIFEK 81
                       699****766666..566799*************..**********************************9999..*****97 PP
2B360.43e-19142225289
                        EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                        +  +t+s v k  +l++pk f ++h  +   + +++l+++ g++Wev++iy  + +r+ l++GW+ Fv++n Lk+g ++ F+l++++ 
  GSVIVT01031850001 142 ECLMTKSCVEKCFLLTIPKAFSQSHFPP--AKLKVVLRNSAGKTWEVNCIY--HAKRHSLSGGWSTFVRENSLKQGGTCRFELVEKNV 225
                        556788888999999**********744..4459***************55..555588***********************986433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.028182IPR003340B3 DNA binding domain
SMARTSM010197.3E-6182IPR003340B3 DNA binding domain
PfamPF023621.7E-14581IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-19583IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-19583IPR015300DNA-binding pseudobarrel domain
CDDcd100173.08E-13579No hitNo description
Gene3DG3DSA:2.40.330.105.7E-28133230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-25134230IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-20139231No hitNo description
PfamPF023622.4E-17141223IPR003340B3 DNA binding domain
PROSITE profilePS5086314.692141231IPR003340B3 DNA binding domain
SMARTSM010192.8E-15141228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009029anatomystamen
PO:0007016developmental stagewhole plant flowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MTLQRIPPAF IKHLAGDISD RATLTCSSGG HWGVTVWKNP DGTYLEDGWK EFMRENNLGD  60
DEFLVFIYDG DMRFHVKIFE KNGVKRSAPI SDNPTEEETG ASSGKRSRGR PRKYPVGSLQ  120
GPVESSRTQK TRSFTSKFPY FECLMTKSCV EKCFLLTIPK AFSQSHFPPA KLKVVLRNSA  180
GKTWEVNCIY HAKRHSLSGG WSTFVRENSL KQGGTCRFEL VEKNVMQVHV L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4305900.0AM430590.2 Vitis vinifera contig VV78X234759.34, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019074382.11e-166PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLD7TPS91e-173D7TPS9_VITVI; Uncharacterized protein
STRINGVIT_03s0063g01440.t011e-174(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1159047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.19e-25B3 family protein