PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01031848001 | ||||||||
Common Name | VIT_03s0063g01420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | B3 | ||||||||
Protein Properties | Length: 79aa MW: 9137.52 Da PI: 10.065 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.5 | 2.1e-17 | 3 | 77 | 17 | 96 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++p +f + g+ +++++ ++l+++ + W+v + + +r+++++GW F++ n+Lk+gD+++F+l++++e + v+v GSVIVT01031848001 3 RIPQSFS-AAGHFPPSKMRVVLRNSAEKAWDVSC--IYHARRHYFSRGWAPFARYNNLKQGDVCIFELVNKDE--MQVHV 77 5899996.4444567889****************..777778*************************986443..45554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 14.762 | 1 | 78 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-22 | 2 | 77 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.89E-16 | 3 | 78 | No hit | No description |
SuperFamily | SSF101936 | 1.7E-19 | 3 | 77 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.1E-15 | 3 | 76 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0007016 | developmental stage | whole plant flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MQRIPQSFSA AGHFPPSKMR VVLRNSAEKA WDVSCIYHAR RHYFSRGWAP FARYNNLKQG 60 DVCIFELVNK DEMQVHVL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM430590 | 1e-121 | AM430590.2 Vitis vinifera contig VV78X234759.34, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019074382.1 | 2e-25 | PREDICTED: putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | D7TPS7 | 1e-52 | D7TPS7_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0063g01420.t01 | 2e-53 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP7653 | 9 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 3e-12 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01031848001 |