PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031804001
Common NameLOC100267475, VIT_03s0063g01060
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 402aa    MW: 44428.9 Da    PI: 6.5309
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031804001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1049.1e-33256311156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k+r++W+peLH+rFv+a++qLGGs+ AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  GSVIVT01031804001 256 KQRRCWSPELHRRFVNALQQLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 311
                        79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.75E-18253314IPR009057Homeodomain-like
PROSITE profilePS5129414.115253313IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-30254315IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-27256311IPR006447Myb domain, plants
PfamPF002496.2E-8258309IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MGSIPPELSL DLRPSYMPKT INDFLSGIST IGDVSERVTK LDEFLKRLEE EMRKIDAFKR  60
ELPLCMILLS DAILALKEEL LRSKASNVQP VLEEFIPLKK DCDEEGGAKE EKECKDKKNW  120
MSSVQLWNSD DSASTDHIYD KKQDSKLEIK QRVDEENRPA TEDPFQPCKS RTGGRAFLPF  180
KGYSGFPVAT ARKEDKDELP VHGLSLLTPG IKNPREESGS SGSKTSCSRG VSSSAPNLQP  240
NLRTGPQPPQ QQTARKQRRC WSPELHRRFV NALQQLGGSQ AATPKQIREL MQVDGLTNDE  300
VKSHLQKYRL HTRRMPTTSA APPSNQPVVV LGSLWMPQDQ YGDSSKASSS QSASPQGPLQ  360
LGGAAGGTST TGGDSMEDDE DEKSESYGWK SQVHKSVKED V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-14256309255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-14256309255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-14256309154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-14256309154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-14256309154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-14256309154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-14256309255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-14256309255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-14256309255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-14256309255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-14256309255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-14256309255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.63870.0fruit| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4689010.0AM468901.2 Vitis vinifera contig VV78X107915.8, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284970.20.0PREDICTED: myb family transcription factor EFM isoform X2
TrEMBLD7TPP20.0D7TPP2_VITVI; Uncharacterized protein
STRINGVIT_03s0063g01060.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25631133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-59G2-like family protein