PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01031763001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | B3 | ||||||||
Protein Properties | Length: 161aa MW: 18405.2 Da PI: 7.3411 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.4 | 1.1e-17 | 40 | 123 | 4 | 93 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ++++s+v k ++++p++f++ h + e++ t++lede g+++e ++ +++++ l++GW++F +++Lk+gD++vF l+g +f+ + GSVIVT01031763001 40 TMSRSNVAKGFWMYFPRSFCKLHL-P-ENDATIILEDEAGEEYETNFLVNRSG----LSAGWRKFSLDHQLKVGDILVFLLVGPCKFKVF 123 7899****************8884.3.46789***************666666....9***********************998777433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-23 | 31 | 127 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-19 | 32 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.05E-24 | 35 | 126 | No hit | No description |
SMART | SM01019 | 1.0E-19 | 37 | 128 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.999 | 37 | 128 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-15 | 40 | 123 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MTDPLICCLY DLYLNRYPLM EQAKKIIADH GSELPSLTRT MSRSNVAKGF WMYFPRSFCK 60 LHLPENDATI ILEDEAGEEY ETNFLVNRSG LSAGWRKFSL DHQLKVGDIL VFLLVGPCKF 120 KVFIVRVENT IEDDVAGCLL DLRDSRRKNP SLGRRSSREQ * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM445855 | 1e-113 | AM445855.2 Vitis vinifera contig VV78X102978.13, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010647763.1 | 1e-101 | PREDICTED: B3 domain-containing protein At3g19184 | ||||
Refseq | XP_010647764.1 | 1e-101 | PREDICTED: B3 domain-containing protein At3g19184 | ||||
Refseq | XP_010647765.1 | 1e-101 | PREDICTED: B3 domain-containing protein At3g19184 | ||||
Refseq | XP_010647767.1 | 1e-101 | PREDICTED: B3 domain-containing protein At3g19184 | ||||
Refseq | XP_019073960.1 | 1e-101 | PREDICTED: B3 domain-containing protein At3g19184 | ||||
Refseq | XP_019073965.1 | 1e-101 | PREDICTED: B3 domain-containing protein At3g19184 | ||||
TrEMBL | F6HQC2 | 1e-103 | F6HQC2_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0063g00640.t01 | 1e-104 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP995 | 16 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-31 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01031763001 |