PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01031761001 | ||||||||
Common Name | VIT_03s0063g00620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | B3 | ||||||||
Protein Properties | Length: 224aa MW: 25532.3 Da PI: 9.8472 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.7 | 8e-17 | 130 | 213 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ +l lp +f++ h +k + +++l de+g++ vk+ +k++ l++GW++F+ +++L +gD +vF+l++ ++f GSVIVT01031761001 130 FVKPMLQSHVTGGFWLGLPVHFCKMHL-PK-HDEMISLVDEDGNESPVKYLAEKTG----LSGGWRGFAIDHELVDGDALVFQLIKPTKF 213 89*********************9994.33.3459***************555555....***********************9987666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-20 | 124 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-24 | 124 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.11E-26 | 128 | 219 | No hit | No description |
SMART | SM01019 | 3.5E-22 | 130 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.1E-15 | 130 | 213 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.039 | 130 | 221 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MGVSEVSYEE SRRKRLEENK KRMEELNLHK LSESLRTARS PKSSPVKKVK PRTPRSPVDL 60 SAVRRSSRFV DKPSPNYKEV PIEPLERSKR LSYQRRDLLN RVYASDEARV YAVERAEELQ 120 SGLETDFPSF VKPMLQSHVT GGFWLGLPVH FCKMHLPKHD EMISLVDEDG NESPVKYLAE 180 KTGLSGGWRG FAIDHELVDG DALVFQLIKP TKFQVLGLKF VPI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM445855 | 1e-130 | AM445855.2 Vitis vinifera contig VV78X102978.13, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010647760.1 | 1e-154 | PREDICTED: B3 domain-containing protein At3g19184 isoform X1 | ||||
Swissprot | Q1G3M3 | 9e-87 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | F6HQC1 | 1e-155 | F6HQC1_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0063g00620.t01 | 1e-156 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP995 | 16 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-73 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01031761001 |
Publications ? help Back to Top | |||
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