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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01031761001 |
Common Name | VIT_03s0063g00620 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
B3 |
Protein Properties |
Length: 224aa MW: 25532.3 Da PI: 9.8472 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01031761001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 52.7 | 8e-17 | 130 | 213 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
f+k +++s+v+ +l lp +f++ h +k + +++l de+g++ vk+ +k++ l++GW++F+ +++L +gD +vF+l++ ++f
GSVIVT01031761001 130 FVKPMLQSHVTGGFWLGLPVHFCKMHL-PK-HDEMISLVDEDGNESPVKYLAEKTG----LSGGWRGFAIDHELVDGDALVFQLIKPTKF 213
89*********************9994.33.3459***************555555....***********************9987666 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MGVSEVSYEE SRRKRLEENK KRMEELNLHK LSESLRTARS PKSSPVKKVK PRTPRSPVDL 60 SAVRRSSRFV DKPSPNYKEV PIEPLERSKR LSYQRRDLLN RVYASDEARV YAVERAEELQ 120 SGLETDFPSF VKPMLQSHVT GGFWLGLPVH FCKMHLPKHD EMISLVDEDG NESPVKYLAE 180 KTGLSGGWRG FAIDHELVDG DALVFQLIKP TKFQVLGLKF VPI*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM445855 | 1e-130 | AM445855.2 Vitis vinifera contig VV78X102978.13, whole genome shotgun sequence. |