PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01031718001

Common Name

LOC100264010, VIT_03s0063g00170, VITISV_026442

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

bHLH

Protein Properties

Length: 306aa MW: 32882.7 Da PI: 8.4553

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01031718001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41	3.3e-13	98	141	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+++++ f+ L llP++ +K +K++i+ +Av+YIk Lq GSVIVT01031718001 98 TERERRKKMRNMFSSLHALLPQL----PPKADKSTIVDEAVNYIKTLQ 141 6*******************6....39****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.018	90	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-16	91	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-15	94	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.21E-14	95	145	No hit	No description
SMART	SM00353	2.4E-9	98	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-10	98	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	2.88E-5	229	280	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAEGGGHEGF LWENQSWGFS NSDNSGGSDK KSGEKQPGSA SNSQTAATGM DLVPPDKKRG 60 RGGAIKNGKN GKGSGEGNEG KSGGGGGGES DHEIHIWTER ERRKKMRNMF SSLHALLPQL 120 PPKADKSTIV DEAVNYIKTL QHTLQKLQKQ KLERLQGATT VNYEPSIITS QKLAFDSREA 180 FLADQGSSSN LAITPSNSSN SLSVARVPAV FQSWTSPNVT LNVCGNEAQI SVCSPKKPGL 240 LTTICYVLEK HKLEVISAHV SSDYNRSMYM IQTNANGALD QFPVGFPMEE VYKQAAGEIM 300 FWASS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM446591	0.0	AM446591.2 Vitis vinifera contig VV78X122741.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002282369.1	0.0	PREDICTED: transcription factor bHLH95
TrEMBL	A5B4T9	0.0	A5B4T9_VITVI; Uncharacterized protein
STRING	VIT_03s0063g00170.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1226	15	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	6e-48	bHLH family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01031718001
Entrez Gene	100264010

Publications ? help Back to Top
Velasco R, et al. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS ONE, 2007. 2(12): p. e1326 [PMID:18094749]