 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GSVIVT01031459001 |
| Common Name | LOC100244865, VIT_06s0061g00780 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
| Family |
C2H2 |
| Protein Properties |
Length: 368aa MW: 40634.1 Da PI: 8.4773 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01031459001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 23.2 | 1.7e-07 | 200 | 222 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++Cgk F+r nL+ H+r H
GSVIVT01031459001 200 HYCQICGKGFKRDANLRMHMRAH 222
68*******************99 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 368 aa
Download sequence Send
to blast |
MIPVGTSNCF VNGSQGLQMY GMTAEGSVSS SLGGSSVLEA HSCSLVYSFS ILKDKVHQVQ 60
SLISIFVPPN QGQPESMAMA VAGMGNLIQE VIAAASSMMY SCQQMGYGAA PGNSGTNHGL 120
PQQGVELSDG RVCGDTGVVQ MGEERGQGFY SSDQSLDWYG DNHNNSNTND HSRTIIVSNN 180
DKTFDIVELD AEDLLAKYTH YCQICGKGFK RDANLRMHMR AHGDEYKSNA ALSNPTKNIG 240
REMENKDDLI KLPRKYSCPQ EGCRWNRKHA KFQPLKSMIC VKNHYKRSHC PKMYICKRCN 300
QKQFSVLSDL RTHEKHCGDL KWLCSCGTTF SRKDKLMGHV ALFVGHTPAI NSMSKPVKFY 360
QNASRLQ*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed at low levels in roots (e.g. root tips and lateral roots), leaves (e.g. at the edge of mature leaves, possibly in hydathodes, and in vascular bundles), flowers (e.g. floral filaments), stems, siliques and cotyledons. {ECO:0000269|PubMed:23935008}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM427000 | 0.0 | AM427000.2 Vitis vinifera contig VV78X235112.6, whole genome shotgun sequence. |
