PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01031387001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 25596.1 Da PI: 9.5878 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1.1e-17 | 44 | 94 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +rWv+e+rdp++ + r++lg+f t+e+Aa+a++ a+++++g GSVIVT01031387001 44 PVYRGVRQRN-GNRWVCEVRDPKT---KSRIWLGTFSTPEMAARAHDVAALAFRG 94 68*****999.9*********954...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.8E-12 | 44 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-21 | 45 | 104 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-30 | 45 | 104 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-28 | 45 | 108 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.773 | 45 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-8 | 46 | 57 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.28E-29 | 46 | 104 | No hit | No description |
PRINTS | PR00367 | 7.6E-8 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MESERDQSSP SSSSSSSQTK CSISSSPVHK RKAGRKKFRE TRHPVYRGVR QRNGNRWVCE 60 VRDPKTKSRI WLGTFSTPEM AARAHDVAAL AFRGNFAALN FPDSASRLPR AKSSSAGDIQ 120 VAALAAAMAF HSPQLESRKK VVGVALEDSE SSEGAPYGSS TVFMDEEALF NMPGLINSMA 180 EGLLLAPPTM LGGFIHCLVF TFSLLHQFYF LFPSLSDDSG KDFHCGCNKL NIKI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-13 | 43 | 102 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269|PubMed:17136305}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00454 | DAP | Transfer from AT4G25490 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM473445 | 0.0 | AM473445.1 Vitis vinifera contig VV78X090477.4, whole genome shotgun sequence. | |||
GenBank | AY390375 | 0.0 | AY390375.1 Vitis vinifera CBF-like transcription factor (Cbf3) gene, complete cds. | |||
GenBank | KF582303 | 0.0 | KF582303.1 Vitis vinifera cultivar Cabernet Sauvignon C-repeat binding factor 3 (CBF3) gene, complete cds. | |||
GenBank | KF582304 | 0.0 | KF582304.1 Vitis labrusca strain 588675 C-repeat binding factor 3 (CBF3) gene, complete cds. | |||
GenBank | KF582305 | 0.0 | KF582305.1 Vitis labrusca strain 483163 C-repeat binding factor 3 (CBF3) gene, complete cds. | |||
GenBank | KF582306 | 0.0 | KF582306.1 Vitis vinifera cultivar Pinot Noir C-repeat binding factor 3 (CBF3) gene, complete cds. | |||
GenBank | KF582307 | 0.0 | KF582307.1 Vitis vinifera cultivar Riesling C-repeat binding factor 3 (CBF3) gene, complete cds. | |||
GenBank | KF582308 | 0.0 | KF582308.1 Vitis riparia strain 483175 C-repeat binding factor 3 (CBF3) gene, complete cds. | |||
GenBank | KF582309 | 0.0 | KF582309.1 Vitis vinifera cultivar Syrah C-repeat binding factor 3 (CBF3) gene, complete cds. | |||
GenBank | KF582310 | 0.0 | KF582310.1 Vitis vinifera cultivar Sangiovese C-repeat binding factor 3 (CBF3) gene, complete cds. | |||
GenBank | KF582311 | 0.0 | KF582311.1 Vitis labrusca strain 588307 C-repeat binding factor 3 (CBF3) gene, complete cds. | |||
GenBank | KF582312 | 0.0 | KF582312.1 Vitis vinifera cultivar Chardonnay C-repeat binding factor 3 (CBF3) gene, complete cds. | |||
GenBank | KF582313 | 0.0 | KF582313.1 Vitis vinifera cultivar Merlot C-repeat binding factor 3 (CBF3) gene, complete cds. | |||
GenBank | KF582314 | 0.0 | KF582314.1 Vitis vinifera cultivar Pinot Grigio C-repeat binding factor 3 (CBF3) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002267961.1 | 1e-118 | PREDICTED: dehydration-responsive element-binding protein 1B | ||||
Swissprot | A2WZI4 | 5e-55 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 5e-55 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | F6GW42 | 1e-138 | F6GW42_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0061g01400.t01 | 1e-139 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 2e-55 | C-repeat/DRE binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01031387001 |
Publications ? help Back to Top | |||
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