PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031338001
Common NameLOC100247781, VIT_14s0060g00260
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 574aa    MW: 61533 Da    PI: 6.8204
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031338001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.4e-16330376455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  GSVIVT01031338001 330 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 376
                        6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.57E-17322380No hitNo description
SuperFamilySSF474591.02E-20323387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-20323384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-14330376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MPFSELYRMA KGKPESVQQK TNDLSFGPEN DFVELVWEGG QIMMQGQSSR ARKSPLSNSF  60
PSHTPKPRDK DTGHGTNSKM GNQDDDMVPW LNYPIDESLQ HDYCSDFLQE LSGVTVNELS  120
THCNFASGEK RNSNNQTIKD SNTISAHNGV SLEQGNASKA SAAGVEPSRP RSSQLYPPSS  180
QQSSTSGFSS TKTQKQDPGQ TRNNSGLMNF SHFSRPAALV KANLQNIVIC QEGACKNEKS  240
SNQVLGARTA KGIPDGEKTI EPAVACSSVC SGNSVERASN DPKHNLKRKC RDTEESECPS  300
EDVEEESVGV RKSAPAKGGT GSKRSRAAEV HNLSERRRRD RINEKMRALQ ELIPNCNKVD  360
KASMLDEAIE YLKTLQLQVQ IMSMGTGLCM PPMMLPTGMQ HIHAAHMGHF PPMGVGMGMG  420
MGMGYGMGML DMNGGSPSCP FIQAPPMQGT HFPGRPISVP PNLHGMVGSN LQVFGLPGQG  480
IPLSMPHAPL IPMSGSPLMK SSMALNDSGA AGSMEVPDSA PASSSKDLIQ NVNSQVMQNN  540
DANSSMASSQ CQEQSALVQK NDQAPDVSHG EGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1334339ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.104310.0leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4416760.0AM441676.1 Vitis vinifera contig VV78X029411.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019080611.10.0PREDICTED: transcription factor APG isoform X4
TrEMBLF6I4I60.0F6I4I6_VITVI; Uncharacterized protein
STRINGVIT_14s0060g00260.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.28e-71phytochrome interacting factor 3