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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01031300001 | ||||||||
Common Name | LOC104881371, VIT_14s0060g00610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C3H | ||||||||
Protein Properties | Length: 153aa MW: 16897.9 Da PI: 8.7151 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.6 | 2.4e-09 | 53 | 79 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 y+ C++f rtG+C+yGd+Ck+ H++ GSVIVT01031300001 53 YGKGVCNRFVRTGFCQYGDSCKYFHPK 79 56668********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 2.6E-5 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 4.42E-18 | 4 | 61 | No hit | No description |
Pfam | PF06220 | 3.2E-10 | 5 | 38 | IPR013085 | Zinc finger, U1-C type |
SMART | SM00356 | 6.7E-4 | 52 | 79 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.07 | 52 | 80 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-7 | 53 | 82 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-7 | 53 | 79 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-7 | 57 | 82 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MPLGKYHCDY CDKQFQDTPS ARKRHLQGLQ HQRAKALWYD SFRDPNQIQA EGYGKGVCNR 60 FVRTGFCQYG DSCKYFHPKQ SLQNTNTQSI PVTGFPDNIQ SLSNPGNQLV GGGPLPGNVV 120 KDSMGNSWGN LPPSLKPPPE GGYPPLPFLD WG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM452437 | 3e-63 | AM452437.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X139229.4, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010659728.1 | 1e-110 | PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1 | ||||
Swissprot | Q0JP11 | 3e-48 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | D7UA82 | 1e-109 | D7UA82_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0060g00610.t01 | 1e-109 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8539 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 8e-31 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01031300001 |
Entrez Gene | 104881371 |
Publications ? help Back to Top | |||
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