PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01031203001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GATA | ||||||||
Protein Properties | Length: 110aa MW: 12271.3 Da PI: 9.2185 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.9 | 7.5e-20 | 21 | 55 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp g+k+LCnaCG++yrk+++ GSVIVT01031203001 21 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKRRS 55 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.4E-15 | 15 | 67 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.55E-14 | 16 | 55 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.2E-16 | 17 | 69 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 9.3E-18 | 21 | 55 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.479 | 21 | 70 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 21 | 46 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.93E-11 | 21 | 54 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MMDLSKKESL SEEMNEIKKC CTDCKTTKTP LWRGGPAGPK SLCNACGIRY RKRRSSMVGV 60 NKKKERMNSE TEEEVGGRRT SSCTVDGTLM WLCFCLVEKG QKGGEWLKP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM454778 | 1e-61 | AM454778.1 Vitis vinifera contig VV78X007757.13, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002278369.2 | 6e-44 | PREDICTED: GATA transcription factor 16 | ||||
TrEMBL | A0A438DV86 | 1e-42 | A0A438DV86_VITVI; GATA transcription factor 16 | ||||
TrEMBL | A5BCR3 | 1e-42 | A5BCR3_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0060g01520.t01 | 2e-42 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16141.1 | 4e-14 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01031203001 |