![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSVIVT01031112001 | ||||||||
Common Name | LOC100263074, VIT_14s0060g02440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 514aa MW: 56211.1 Da PI: 8.9291 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.5e-05 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H GSVIVT01031112001 87 FVCEICNKGFQRDQNLQLHRRGH 109 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.00061 | 163 | 185 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ GSVIVT01031112001 163 WKCDKCSKKYAVQSDWKAHSKTC 185 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.17E-6 | 86 | 109 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 86 | 109 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 87 | 109 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 8.2E-5 | 87 | 109 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 128 | 158 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.2E-4 | 151 | 184 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.17E-6 | 158 | 183 | No hit | No description |
SMART | SM00355 | 150 | 163 | 183 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 514 aa Download sequence Send to blast |
MSNITAGDGG SFSSGTNGGE EVQQQPVNNL HGLSSSVPSS TSNNSNGSIS QQQPPPAKKK 60 RNLPGNPDPS AEVIALSPTT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS 120 TEIRKRVYVC PEPSCVHHNP ARALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA 180 HSKTCGTREY KCDCGTIFSR RDSFITHRAF CDALAEENTK VNQGLANTMR RNLQIQGQVS 240 ELLSSMPLNN NPNSTMGLSE FTHSDSKNHL KTLPHEPMPV PPKPLNMAAA GMFSTTSGSL 300 FGCPITASFE NGQQLPPPPA STLMSATALL QKAAQMGATA STKMNNSPPK GFVTSMAPTP 360 FGGILLQKNS SSNDHHLQAD PTQFLNQFFY QNDGAESEVM SEMGMFSGLF DQNHGLFKNM 420 EHHEHSNSNN ILAAKTTNPG LSSTPRNGKT DTMTVDFLGI GGARPGNFHG QQQQQQEMFE 480 GMNINHPRMQ GFSSFEQHIA HGQAAMEKTM WEA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-34 | 159 | 222 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 3e-34 | 159 | 222 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Vvi.74 | 0.0 | fruit| inflorescence |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM461084 | 0.0 | AM461084.2 Vitis vinifera contig VV78X078964.16, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002284051.1 | 0.0 | PREDICTED: protein indeterminate-domain 2 | ||||
Swissprot | Q9SCQ6 | 1e-116 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | F6I4K8 | 0.0 | F6I4K8_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0060g02440.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-105 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GSVIVT01031112001 |
Entrez Gene | 100263074 |
Publications ? help Back to Top | |||
---|---|---|---|
|