PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01031112001
Common NameLOC100263074, VIT_14s0060g02440
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 514aa    MW: 56211.1 Da    PI: 8.9291
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01031112001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-0587109123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C+k F r  nL+ H r H
  GSVIVT01031112001  87 FVCEICNKGFQRDQNLQLHRRGH 109
                        89*******************88 PP
2zf-C2H212.10.00061163185123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s+ k H +t+
  GSVIVT01031112001 163 WKCDKCSKKYAVQSDWKAHSKTC 185
                        58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.17E-686109No hitNo description
Gene3DG3DSA:3.30.160.601.7E-586109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01787109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94987109IPR007087Zinc finger, C2H2
PfamPF121718.2E-587109IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SMARTSM00355220128158IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.2E-4151184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.17E-6158183No hitNo description
SMARTSM00355150163183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MSNITAGDGG SFSSGTNGGE EVQQQPVNNL HGLSSSVPSS TSNNSNGSIS QQQPPPAKKK  60
RNLPGNPDPS AEVIALSPTT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS  120
TEIRKRVYVC PEPSCVHHNP ARALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA  180
HSKTCGTREY KCDCGTIFSR RDSFITHRAF CDALAEENTK VNQGLANTMR RNLQIQGQVS  240
ELLSSMPLNN NPNSTMGLSE FTHSDSKNHL KTLPHEPMPV PPKPLNMAAA GMFSTTSGSL  300
FGCPITASFE NGQQLPPPPA STLMSATALL QKAAQMGATA STKMNNSPPK GFVTSMAPTP  360
FGGILLQKNS SSNDHHLQAD PTQFLNQFFY QNDGAESEVM SEMGMFSGLF DQNHGLFKNM  420
EHHEHSNSNN ILAAKTTNPG LSSTPRNGKT DTMTVDFLGI GGARPGNFHG QQQQQQEMFE  480
GMNINHPRMQ GFSSFEQHIA HGQAAMEKTM WEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34159222366Zinc finger protein JACKDAW
5b3h_F3e-34159222366Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.740.0fruit| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4610840.0AM461084.2 Vitis vinifera contig VV78X078964.16, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284051.10.0PREDICTED: protein indeterminate-domain 2
SwissprotQ9SCQ61e-116IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLF6I4K80.0F6I4K8_VITVI; Uncharacterized protein
STRINGVIT_14s0060g02440.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-105indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]