PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01031020001

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

bHLH

Protein Properties

Length: 320aa MW: 36016.8 Da PI: 8.3259

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01031020001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.2	1.2e-07	212	259	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR++i++++ L++l+P + ++ K a +L + ++Y++sLq GSVIVT01031020001 212 NHSIAERVRREKIKTRLRCLQDLVPGC---YKNKG-MAVMLDEIINYVHSLQ 259 7*************************9...55553.3788999999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.36E-10	206	263	No hit	No description
SuperFamily	SSF47459	8.9E-15	206	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.272	208	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-14	208	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.8E-5	212	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-7	214	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MAHFPIGYIS SIQTPPRGNT AFLLEPYPQL FEHPLSSLRR LYNWNCVIVD FSDSMQSFRP 60 SQPFLGMDVT MEMVNQFAEM NPIMLENFNI TDVSVENLLA HQQPELMGTF AYNLQSSFES 120 NGLSSMPVVQ SMPSSGNAFH ESKRRKVMEQ SKSSSENISS MASGSGLKEI SSTKKKNNLG 180 KGKKGRNSDK ELLDKPDEVI HVRARRGQAT DNHSIAERVR REKIKTRLRC LQDLVPGCYK 240 NKGMAVMLDE IINYVHSLQN QVEFLSRELA AASSLHNFNS ETEAIKNAQG TNTHEGQEME 300 KIVRKGYGEH SCFYPTRTI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.16745	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in stems. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM444866	0.0	AM444866.2 Vitis vinifera contig VV78X267733.60, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010660417.1	0.0	PREDICTED: transcription factor bHLH75 isoform X1
Swissprot	Q8GWK7	3e-47	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	F6HSS1	0.0	F6HSS1_VITVI; Uncharacterized protein
STRING	VIT_14s0006g02850.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP58	16	313

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	2e-47	BR enhanced expression 1

Link Out ? help Back to Top
Phytozome	GSVIVT01031020001

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]