PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01030969001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C3H | ||||||||
Protein Properties | Length: 249aa MW: 28471.6 Da PI: 8.1366 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 44.1 | 3.4e-14 | 181 | 206 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++ GtC+yGd C+FaHg GSVIVT01030969001 181 FKTELCNKWQEKGTCPYGDLCQFAHG 206 79***********************8 PP | |||||||
2 | zf-CCCH | 23.5 | 1e-07 | 219 | 244 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ tC+yG rC+F H+ GSVIVT01030969001 219 YKTEVCRMVLAGATCPYGHRCHFRHS 244 9**********88**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.10 | 4.8E-4 | 28 | 61 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-18 | 175 | 212 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-10 | 177 | 212 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-8 | 180 | 207 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.108 | 180 | 208 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-11 | 181 | 206 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-11 | 214 | 244 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-7 | 214 | 245 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 218 | 245 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 218 | 246 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-5 | 219 | 244 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MENESNSLQS RLILECQELC DQYDLCRARL HQLAKEVEAL RQENSDLRSA NRELVEHLNI 60 LSEARMRENF LCYDFRRLSV GEGHGVDEVC GISPTSVIQR KGFRRNVEHI PLPKSISVRS 120 SCYLKMNHSG RSNKAASPQP LNNPLVHATI DSTVVHKDEM VFHAVYNFGF VKVEVYNQGM 180 FKTELCNKWQ EKGTCPYGDL CQFAHGITEL RPIIRHPRYK TEVCRMVLAG ATCPYGHRCH 240 FRHSLCPP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 3e-21 | 181 | 244 | 4 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM441684 | 0.0 | AM441684.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X227619.10, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002281139.1 | 1e-165 | PREDICTED: zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A438D0D7 | 1e-158 | A0A438D0D7_VITVI; Zinc finger CCCH domain-containing protein 15 | ||||
STRING | XP_010062213.1 | 2e-78 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2058 | 16 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 1e-61 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01030969001 |