PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

MYB

Protein Properties

Length: 244aa MW: 27815.5 Da PI: 9.8342

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01030822001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46	1.2e-14	9	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd ll +++++G g W+ ++ + g++R++k+c++rw++yl GSVIVT01030822001 9 KGAWTREEDVLLRTCIEKYGEGKWHQVPFRSGLNRCRKSCRLRWLNYL 56 79********************************************97 PP
2	Myb_DNA-binding	48.7	1.7e-15	62	107	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ t+E +l+++++k+lG++ W++Ia +++ gRt +++k++w+++l GSVIVT01030822001 62 RGKFKTDEVDLIIRLHKLLGNR-WALIAGRLP-GRTSNDVKNYWNTHL 107 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.164	1	56	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.6E-21	6	58	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.87E-28	6	103	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-12	8	58	IPR001005	SANT/Myb domain
Pfam	PF00249	2.7E-13	9	56	IPR001005	SANT/Myb domain
CDD	cd00167	8.95E-9	11	56	No hit	No description
PROSITE profile	PS51294	24.004	57	111	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-23	59	110	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-14	61	109	IPR001005	SANT/Myb domain
Pfam	PF00249	6.8E-14	62	107	IPR001005	SANT/Myb domain
CDD	cd00167	2.09E-9	64	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009753	Biological Process	response to jasmonic acid
GO:0031540	Biological Process	regulation of anthocyanin biosynthetic process
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MDGPSGVRKG AWTREEDVLL RTCIEKYGEG KWHQVPFRSG LNRCRKSCRL RWLNYLRPDI 60 KRGKFKTDEV DLIIRLHKLL GNRWALIAGR LPGRTSNDVK NYWNTHLSKK FFGKAVKDVA 120 DKTAKVTVIK PRPRTFNKNL SYLKGKAAKE SDVQSADHTL SKPYSTPPLS EDGISWLDSL 180 FSGKEGHKES TCFRNGSGKE SISSFWDEEI SAATKVGETF VEENESDWNH FSFDMDLWDL 240 LNA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-22	3	111	1	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00213	DAP	Transfer from AT1G66370	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ556912	0.0	FJ556912.1 Vitis vinifera R2R3 MYBA6 transcription factor splice variant 1 (MYBA6.1) mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002274992.2	0.0	PREDICTED: transcription factor MYB90
Swissprot	Q9FNV9	6e-67	MY113_ARATH; Transcription factor MYB113
TrEMBL	B8YPF8	1e-179	B8YPF8_VITVI; R2R3 MYBA6 transcription factor splice variant 1
STRING	VIT_14s0006g01290.t01	1e-180	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	2e-65	myb domain protein 113

Link Out ? help Back to Top
Phytozome	GSVIVT01030822001

Publications ? help Back to Top
Matus JT,Aquea F,Arce-Johnson P Analysis of the grape MYB R2R3 subfamily reveals expanded wine quality-related clades and conserved gene structure organization across Vitis and Arabidopsis genomes. BMC Plant Biol., 2008. 8: p. 83 [PMID:18647406] Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]