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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01030322001 |
Common Name | VIT_08s0058g00200 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
Trihelix |
Protein Properties |
Length: 227aa MW: 25355.9 Da PI: 10.0037 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01030322001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 42.3 | 2e-13 | 33 | 116 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ + +L+ea ++ +l+rg+l++++W+ev++++ r+ g+ +++ +qCk++++ l+k+yk +k s++p++++l+
GSVIVT01030322001 33 CWSEGATETLVEAWGDRYLELNRGNLRQKDWKEVADAVnsRQNGVkpRKTYIQCKNRIDTLKKKYKLEKSKPAP------SSWPFYSRLD 116
7*************************************8877777546799***************99988775......57****9997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 227 aa
Download sequence Send
to blast |
MDNQAAHPNP RSHHHPFGGG GGGGGGGGGR EDCWSEGATE TLVEAWGDRY LELNRGNLRQ 60 KDWKEVADAV NSRQNGVKPR KTYIQCKNRI DTLKKKYKLE KSKPAPSSWP FYSRLDYLIG 120 AAAAAAPGGK KFAAAAQRKL QKHRMDSMDL SDGAACRELA RAILKFGEIY ERIECAKQQQ 180 MMDLEKQKME FTKDLEVQRM HMFMDAQLEL EKMKHPKFAS GSGKKL*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G05550.1 | 1e-67 | sequence-specific DNA binding transcription factors |