PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030315001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family G2-like
Protein Properties Length: 404aa    MW: 45837.8 Da    PI: 7.483
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030315001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.7e-3298151255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        prlrWtp+LH rFv+ave+LGG+e+AtPk +l+lm++kgL ++hvkSHLQ+YR+
  GSVIVT01030315001  98 PRLRWTPDLHLRFVHAVERLGGQERATPKLVLQLMNIKGLNIAHVKSHLQMYRS 151
                        8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.4194154IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-3094152IPR009057Homeodomain-like
SuperFamilySSF466892.33E-1496152IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-2298153IPR006447Myb domain, plants
PfamPF002491.6E-899150IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSRSRVSVPI CCAWYFLNLE LESRIRSERQ TGTMEESHCA EGSKTSPSEQ NEDEDESEEN  60
DSEGKHKNCR SSSNSTVEEN EKKGHSGAVR PYVRSKMPRL RWTPDLHLRF VHAVERLGGQ  120
ERATPKLVLQ LMNIKGLNIA HVKSHLQMYR SKKIEDPGQV LADHRHLVES GDPNIYNLSQ  180
LPMLQGLNQR PTSSFRYGDA SWSAHENWMH SPFIGRSSVD KTTRPGFYGS VTERIFGGNN  240
NNSTSCNFHM GTSLNEYSTW GTHVRKDSFQ TSFHDHESWR GQAGSSLKEL NQLTQMQAHV  300
RERREHMSLK SRIPSDMNTA TNLQEWRTVK RKASDCDLDL NLSLKLTPRN DETARGLEDN  360
EVDSCNLSLS LYSPSSSKLS RLKEGRDDSM EHATRASTLD LTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1699153357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1699153357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1699153357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1699153357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4303930.0AM430393.2 Vitis vinifera contig VV78X229192.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019077022.10.0PREDICTED: putative Myb family transcription factor At1g14600
TrEMBLA5AMV60.0A5AMV6_VITVI; Uncharacterized protein
STRINGVIT_08s0058g00240.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28515123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.14e-61G2-like family protein