PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01030142001
Common NameVIT_12s0057g01490
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 567aa    MW: 63431.8 Da    PI: 6.6676
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01030142001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.4e-07507562248
                        SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqkyl 48 
                        + W t+E+e l+++v+++         W++I +        +Rt+ ++k++w+k l
  GSVIVT01030142001 507 LLWKTDEEEMLKEGVQKFSATgdknlPWRKILEFGRhvfdGTRTPVDLKDKWRKML 562
                        56*****************99***********998899***************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.109.3E-6123177IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579033.1E-7126180IPR011011Zinc finger, FYVE/PHD-type
PROSITE patternPS013590132175IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5129411.351501566IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-8501564IPR009057Homeodomain-like
SuperFamilySSF466898.52E-9503563IPR009057Homeodomain-like
SMARTSM007172.9E-5505564IPR001005SANT/Myb domain
CDDcd116602.22E-11509562No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MDYFGLKLDF VGLRKKNETR MKRKARAARV WTSTIPPKPS TLAIPLHNLP CSSEISPGCS  60
QGNARPECAN DNSLHSSLLE TSSHYNGEQA HQLAPNSSGE TIVGTKQSGA SGSWDMSTQA  120
WMEIEWTQQS KCIKCGEGGE VLVCSDRVCR LAVHEKCMNC SAAFDDMGDF YCPYCWYRCA  180
IAKSNEARKR AMSSKKALST FLDTKALCGN QQKEKTKSSN GKKPPSTSER SCNENEYRLD  240
YDEVYNQSVQ AEKDQQDGFA LDFEQHQIVA QHQWHMKSSV DDGDGNLYSR EEGTTSADGS  300
FQGFVANQKF DGVKQLAAVK VREMIQEEHS REVGDCQDEG VAEDQQEAEP LNDCHLEEET  360
TLDGDFSVLT KGKKVDAKMT EENLGRREEE EQMQPQAQET TTAIPGGDPA SLVHEKVNIG  420
FRIIDSCRGA RTLLTHQRHV GQRAKNKMVS QNVDSQKKSS PDLHNNAEKN AGDGTKEVIV  480
SSKSIQPRGP SKQLTNQIFP NERRKKLLWK TDEEEMLKEG VQKFSATGDK NLPWRKILEF  540
GRHVFDGTRT PVDLKDKWRK MLAKES*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.70270.0bud| cell culture| flower| fruit| inflorescence| leaf| pedicel| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4595390.0AM459539.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X142100.4, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010657505.10.0PREDICTED: uncharacterized protein LOC104880931
RefseqXP_010657506.10.0PREDICTED: uncharacterized protein LOC104880931
TrEMBLD7TDB70.0D7TDB7_VITVI; Uncharacterized protein
STRINGVIT_12s0057g01490.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1443713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.28e-07MYB_related family protein