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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | GSVIVT01030079001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 1356aa MW: 154757 Da PI: 7.835 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 76 | 7.3e-24 | 71 | 162 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89
++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke +w+v+++++ HnHel
GSVIVT01030079001 71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVTQWYVSQFSNVHNHEL 161
69********************8888.******************************************998766789*************9 PP
FAR1 90 a 90
GSVIVT01030079001 162 L 162
6 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.0E-21 | 71 | 162 | IPR004330 | FAR1 DNA binding domain |
| Pfam | PF10551 | 2.7E-24 | 294 | 387 | IPR018289 | MULE transposase domain |
| PROSITE profile | PS50966 | 9.545 | 566 | 601 | IPR007527 | Zinc finger, SWIM-type |
| Pfam | PF04434 | 3.6E-6 | 573 | 597 | IPR007527 | Zinc finger, SWIM-type |
| SMART | SM00575 | 0.0012 | 576 | 603 | IPR006564 | Zinc finger, PMZ-type |
| SuperFamily | SSF51735 | 7.28E-58 | 864 | 1053 | IPR016040 | NAD(P)-binding domain |
| Gene3D | G3DSA:3.40.50.720 | 1.0E-76 | 866 | 1049 | IPR016040 | NAD(P)-binding domain |
| Hamap | MF_00966 | 88.891 | 867 | 1349 | IPR001282 | Glucose-6-phosphate dehydrogenase |
| TIGRFAMs | TIGR00871 | 3.8E-173 | 869 | 1348 | IPR001282 | Glucose-6-phosphate dehydrogenase |
| Pfam | PF00479 | 8.4E-57 | 872 | 1050 | IPR022674 | Glucose-6-phosphate dehydrogenase, NAD-binding |
| PRINTS | PR00079 | 1.6E-53 | 1006 | 1019 | IPR001282 | Glucose-6-phosphate dehydrogenase |
| PRINTS | PR00079 | 1.6E-53 | 1030 | 1058 | IPR001282 | Glucose-6-phosphate dehydrogenase |
| PROSITE pattern | PS00069 | 0 | 1040 | 1046 | IPR019796 | Glucose-6-phosphate dehydrogenase, active site |
| SuperFamily | SSF55347 | 3.92E-109 | 1040 | 1347 | No hit | No description |
| Gene3D | G3DSA:3.30.360.10 | 1.9E-125 | 1050 | 1347 | No hit | No description |
| Pfam | PF02781 | 3.8E-110 | 1053 | 1347 | IPR022675 | Glucose-6-phosphate dehydrogenase, C-terminal |
| PRINTS | PR00079 | 1.6E-53 | 1082 | 1099 | IPR001282 | Glucose-6-phosphate dehydrogenase |
| PRINTS | PR00079 | 1.6E-53 | 1100 | 1116 | IPR001282 | Glucose-6-phosphate dehydrogenase |
| PRINTS | PR00079 | 1.6E-53 | 1187 | 1213 | IPR001282 | Glucose-6-phosphate dehydrogenase |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006006 | Biological Process | glucose metabolic process | ||||
| GO:0055114 | Biological Process | oxidation-reduction process | ||||
| GO:0004345 | Molecular Function | glucose-6-phosphate dehydrogenase activity | ||||
| GO:0008270 | Molecular Function | zinc ion binding | ||||
| GO:0050661 | Molecular Function | NADP binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1356 aa Download sequence Send to blast |
MAMKPSNNIW IRRQQCPCGD WKCYIKYEGD DQTSANSQLV KSETSSSSLA SEVVFTPYVG 60 QIFKSDDEAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH 120 PRDRKSVRCG CDAKLYLTKE IVDGVTQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD 180 QERILLLSKA GFPVNRIVRV LETEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDALLTEK 240 RENDTLELLE TCKALSERDP DFVYDFTMDP NDKVENIAWS YGNSVHAYSV FGDVVAFDTT 300 YRSITYGLLL GVWFGIDNHG KAIFFGCVLL QDETSQSFAW ALQTFVRFMR GRRPQTILTD 360 IDSGLRDAIT SELPNTKHVI CLWHILSKLS SWFSLPLGPQ YMDFKSQFDI LCRLESIEDF 420 EHQWHHLVAQ FGLVSDKHIG LLFSYRASWP FSCIRGYFLA RMMTSEYSKS LDMFFKRILS 480 AQTCLQAFFE QVGVAASWAN QTRENMQYMH IKTCMPIEEH AQSILTPYAF NVLQHEIVLS 540 MQYATREMAN GSYLVRHYKT VDGGCLVIWM PEEEQIHCSC KEFEHSGLLC RHSLRLLVVK 600 NYFQLPDKYF PLRWRKESSL ITMDDHNTQS NSDECSQAFH SLAATLLTES LVSKERFNYV 660 HKELTGLLDH VRNMPVVDEV SLNMAPNNNI TSCCASNLIP SLIFFMKSSH FLFNSSALSN 720 PVSSSSSSSS SLITRNQFSW PICLSSSSST STSTSSSVIT MVLFCKIQPN CMATRINPCS 780 SSSFKHDVHI PTRRITIASS RTYRTSKWVS QISSGIHAKR HLELKSSNGY PLNAVPLQDG 840 NPLTEDHIAP QLKERPFISG SESPESTLSI TVVGASGDLA KKKIFPALFA LFYEDWLPEN 900 FAVFGYARTK MTDEELRDMI SKTLTCRIDK SANCGDKMDQ FLKRCFYHSG QYSSEEHFAE 960 LDKKLKEKEG GKLPNRLFYL SIPPNIFVDV VRCASLRASS ASGWTRVIVE KPFGRDSQSS 1020 GELTRSLKKY LNEDQIFRID HYLGKELVEN LSVLRFSNLV FEPLWSRNYI RNVQLIFSED 1080 FGTEGRGGYF DNYGIIRDIM QNHLLQILAL FAMETPVSLD AEDIRNEKVK VLRSMRPLQL 1140 EDVIVGQYKG HSKGGQSYPA YTDDPTVPKG SITPTFAAAA LFINNARWDG VPFLMKAGKA 1200 LHTRRAEIRV QFRHVPGNLY KRNFGTDLDK ATNELVLRVQ PDEAIYLKIN NKVPGLGMKL 1260 DRSDLNLLYR ARYPRGIPDA YERLLLDAIE GERRLFIRSD ELDAAWALFT PLLKESEEKK 1320 IIPELYPYGS RGPVGAHYLA AKHNVRWGDL SGEEL* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1qki_A | 1e-146 | 843 | 1342 | 6 | 497 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE |
| 1qki_B | 1e-146 | 843 | 1342 | 6 | 497 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE |
| 1qki_C | 1e-146 | 843 | 1342 | 6 | 497 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE |
| 1qki_D | 1e-146 | 843 | 1342 | 6 | 497 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE |
| 1qki_E | 1e-146 | 843 | 1342 | 6 | 497 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE |
| 1qki_F | 1e-146 | 843 | 1342 | 6 | 497 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE |
| 1qki_G | 1e-146 | 843 | 1342 | 6 | 497 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE |
| 1qki_H | 1e-146 | 843 | 1342 | 6 | 497 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AM470221 | 0.0 | AM470221.2 Vitis vinifera contig VV78X195282.2, whole genome shotgun sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010657467.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
| Refseq | XP_010657468.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
| Refseq | XP_010657469.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
| Refseq | XP_019078798.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
| Refseq | XP_019078799.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
| Refseq | XP_019078800.1 | 0.0 | PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 | ||||
| Swissprot | Q9LKR4 | 0.0 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
| TrEMBL | F6HHP5 | 0.0 | F6HHP5_VITVI; Uncharacterized protein | ||||
| STRING | VIT_12s0057g00960.t01 | 0.0 | (Vitis vinifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G28530.1 | 0.0 | FAR1-related sequence 10 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | GSVIVT01030079001 |
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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