 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GSVIVT01030046001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
| Family |
WRKY |
| Protein Properties |
Length: 365aa MW: 40822 Da PI: 5.2848 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01030046001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 97.6 | 8.3e-31 | 67 | 124 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
+DgynWrKYGqK+vkg+ef rsYYrCt+++C+vkk++ers+ d+++++i+Y g+H+h+k
GSVIVT01030046001 67 EDGYNWRKYGQKHVKGNEFIRSYYRCTHPNCQVKKQLERSH-DGQITDIIYFGKHDHPK 124
7****************************************.***************85 PP
|
| 2 | WRKY | 106.6 | 1.3e-33 | 241 | 299 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
++Dgy+WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++dpk+v++tYeg+H+h+
GSVIVT01030046001 241 VNDGYRWRKYGQKLVKGNTNPRSYYRCSNAGCPVKKHVERASHDPKMVITTYEGQHDHD 299
58********************************************************7 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MKVPTTSDFG TLVQVQDQFE WQSFTYDLND VDSNKLQQRQ IPDTGVHASQ SHQEAIMPSI 60
IPEKASEDGY NWRKYGQKHV KGNEFIRSYY RCTHPNCQVK KQLERSHDGQ ITDIIYFGKH 120
DHPKLQVDLP LAVGLVVPVQ EERPKEPSST VVEEKSLDGD GQTSCQIEPV DAPQPAIAVS 180
DDCVDRALAV WSRTRDETDN DDDPDSKRQK KDINNVDATP TDKPSGEPRI VVQTVSEVDI 240
VNDGYRWRKY GQKLVKGNTN PRSYYRCSNA GCPVKKHVER ASHDPKMVIT TYEGQHDHDM 300
PPARTVTHNS AGPNTTTTDV NDESRAKSEQ SDNVGLAIVP YICLGPENNK SNDQQTPSAE 360
PVQT*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM480933 | 0.0 | AM480933.2 Vitis vinifera contig VV78X168671.5, whole genome shotgun sequence. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP14 | 17 | 875 |
