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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01029942001 |
Common Name | VIT_08s0056g01200 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
WOX |
Protein Properties |
Length: 237aa MW: 25875.9 Da PI: 6.7833 |
Description |
WOX family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01029942001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 47.9 | 2.2e-15 | 17 | 77 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
r+R+t+++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++
GSVIVT01029942001 17 RSRWTPKPEQIIILESIFNSgMVNPPKDETVRIRKLLepygSVGDANVFYWFQNRRSRSRR 77
89*****************99*************************************997 PP
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2 | Wus_type_Homeobox | 106.1 | 2.2e-34 | 16 | 79 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
+r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le yG ++d+NVfyWFQNr++R+r++q
GSVIVT01029942001 16 VRSRWTPKPEQIIILESIFNSGMVNPPKDETVRIRKLLEPYGSVGDANVFYWFQNRRSRSRRRQ 79
589***********************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MEDRGQDHGL ERNEPVRSRW TPKPEQIIIL ESIFNSGMVN PPKDETVRIR KLLEPYGSVG 60 DANVFYWFQN RRSRSRRRQR QIQASLAGDR GAQAHAGGAI HYQSNLMPPS AFVPSSSSCL 120 VGSSSSCGGM NDDGVDNLFS FSGQVGLQEM ENSSGVTSTL CPSNTSNLHY QSGCVTVFIN 180 GVPTEVPKGS FDMKAMFGQD FVLVHSSGVP VPFNEFGFSM QSLQHGESYF LVSIAR*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM435207 | 0.0 | AM435207.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X265020.6, clone ENTAV 115. |