PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01029688001
Common NameLOC100264153, VIT_12s0055g00340
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 491aa    MW: 53986.8 Da    PI: 4.877
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01029688001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.7e-30231290159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  GSVIVT01029688001 231 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 290
                        58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-32216292IPR003657WRKY domain
SuperFamilySSF1182901.27E-27224292IPR003657WRKY domain
PROSITE profilePS5081128.988226292IPR003657WRKY domain
SMARTSM007743.2E-37231291IPR003657WRKY domain
PfamPF031063.8E-27232290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MREGRPMEID LSLKIDDEGE GDGEGEEEAE GEEGDEQVQR EDQQKEKETG HVEDKGEDVE  60
AASSVEENLK TEELCVLQME MNRMKEENKV LRKVVEETMK DYRDLQMKFA LIQQNKQNKD  120
LQISLSLHGK DRNLQDPRRI SKVLNINDQI LPSSPEDNEE SELGLSLRLK PNTREEREED  180
GEANKEETVS FTPIPNRLPR TDLAAIKSHA ASPPNRKARV SVRARCQTAT MNDGCQWRKY  240
GQKIAKGNPC PRAYYRCTVA PGCPVRKQVQ RCLEDMSILI TTYEGTHNHP LPVGATAMAS  300
TTSAAASFML VDSSNPLSEA SLSYPNSHFI NPGSSSSMIR SINPNDPSKG IVLDLTNTTP  360
SDPQQFPLQS SSHSSAQLGF SWMPSKPSYH SGGSTNIANN LFPNPRAAEE DRSIAENVTA  420
ITSNPDFRVA VAAAITSFIN KESHTSTHTT GPPFANPRDG EGGGGSSGNN WVLESLPANP  480
SIFFFHFSNG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22218294176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4727690.0AM472769.2 Vitis vinifera contig VV78X277460.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010657556.10.0PREDICTED: probable WRKY transcription factor 9
TrEMBLF6H1R30.0F6H1R3_VITVI; Uncharacterized protein
STRINGVIT_12s0055g00340.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.18e-79WRKY DNA-binding protein 9