PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01029437001
Common NameLOC100258126, VIT_09s0054g01820
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 395aa    MW: 43284.4 Da    PI: 8.4235
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01029437001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.4e-05628123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y C+ C+k F r  nL+ H r H
  GSVIVT01029437001  6 YICEVCHKGFQRDQNLQLHRRGH 28
                       89*******************88 PP
2zf-C2H213.40.0002282104123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H + +
  GSVIVT01029437001  82 WKCDKCSKRYAVQSDWKAHTKIC 104
                        58*****************9987 PP
3zf-C2H211.30.001112130523
                        TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                        dCg+ Fsrk+++++H   +
  GSVIVT01029437001 112 DCGTIFSRKDSFVTHRAFC 130
                        8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.28E-6528No hitNo description
Gene3DG3DSA:3.30.160.601.9E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.741628IPR007087Zinc finger, C2H2
SMARTSM003550.038628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551404777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.7E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.28E-677102No hitNo description
SMARTSM0035513082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSNT EVKKRVYVCP EPNCVHHDPS  60
RALGDLTGIK KHFCRKHGEK RWKCDKCSKR YAVQSDWKAH TKICGTREYR CDCGTIFSRK  120
DSFVTHRAFC DASAAENYKA NQQIAAAGGT PHNQPQVLFS SSMPTSESSS GANMSMNLSV  180
FNENIDNITR PASLNSPGLT ISNNLNQIFN PTTSQECFGS GIGSNNSPMG IGSTYTSATA  240
LLQKAAEMGA KISDNSIAPV LFRGFTGYSV GSTNSCGSVQ ETSSVISCSM GPVSATANGL  300
YVGNQETFNK DLDAVDVRPS YAVSHSGLFD SSLFMQMKNQ NPADRLEELF MGDGEKMTVD  360
FLGVEPTAYP SNGKKRSYDG NFMGLEYSNT QQNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3078136361Zinc finger protein JACKDAW
5b3h_F1e-3078136361Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.57020.0bud| cell culture| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4520530.0AM452053.2 Vitis vinifera contig VV78X242738.14, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655211.10.0PREDICTED: protein indeterminate-domain 2 isoform X2
RefseqXP_019077796.10.0PREDICTED: protein indeterminate-domain 2 isoform X1
SwissprotQ9SCQ64e-93IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLD7SRR90.0D7SRR9_VITVI; Uncharacterized protein
STRINGVIT_09s0054g01820.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.16e-94indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]