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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01029437001 | ||||||||
Common Name | LOC100258126, VIT_09s0054g01820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 395aa MW: 43284.4 Da PI: 8.4235 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.4e-05 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H GSVIVT01029437001 6 YICEVCHKGFQRDQNLQLHRRGH 28 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.4 | 0.00022 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + GSVIVT01029437001 82 WKCDKCSKRYAVQSDWKAHTKIC 104 58*****************9987 PP | |||||||
3 | zf-C2H2 | 11.3 | 0.001 | 112 | 130 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + GSVIVT01029437001 112 DCGTIFSRKDSFVTHRAFC 130 8**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.28E-6 | 5 | 28 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-5 | 5 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.741 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.038 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 140 | 47 | 77 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.7E-4 | 70 | 103 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.28E-6 | 77 | 102 | No hit | No description |
SMART | SM00355 | 130 | 82 | 102 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSNT EVKKRVYVCP EPNCVHHDPS 60 RALGDLTGIK KHFCRKHGEK RWKCDKCSKR YAVQSDWKAH TKICGTREYR CDCGTIFSRK 120 DSFVTHRAFC DASAAENYKA NQQIAAAGGT PHNQPQVLFS SSMPTSESSS GANMSMNLSV 180 FNENIDNITR PASLNSPGLT ISNNLNQIFN PTTSQECFGS GIGSNNSPMG IGSTYTSATA 240 LLQKAAEMGA KISDNSIAPV LFRGFTGYSV GSTNSCGSVQ ETSSVISCSM GPVSATANGL 300 YVGNQETFNK DLDAVDVRPS YAVSHSGLFD SSLFMQMKNQ NPADRLEELF MGDGEKMTVD 360 FLGVEPTAYP SNGKKRSYDG NFMGLEYSNT QQNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-30 | 78 | 136 | 3 | 61 | Zinc finger protein JACKDAW |
5b3h_F | 1e-30 | 78 | 136 | 3 | 61 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.5702 | 0.0 | bud| cell culture| fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM452053 | 0.0 | AM452053.2 Vitis vinifera contig VV78X242738.14, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010655211.1 | 0.0 | PREDICTED: protein indeterminate-domain 2 isoform X2 | ||||
Refseq | XP_019077796.1 | 0.0 | PREDICTED: protein indeterminate-domain 2 isoform X1 | ||||
Swissprot | Q9SCQ6 | 4e-93 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | D7SRR9 | 0.0 | D7SRR9_VITVI; Uncharacterized protein | ||||
STRING | VIT_09s0054g01820.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 6e-94 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01029437001 |
Entrez Gene | 100258126 |
Publications ? help Back to Top | |||
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