PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028984001
Common NameLOC100241951, VIT_16s0050g00050
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 299aa    MW: 33897 Da    PI: 5.9937
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028984001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.4e-151764148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEd +l ++v ++G g+W++++   g+ R +k+c++rw +yl
  GSVIVT01028984001 17 KGLWSPEEDARLRNYVLKYGLGCWSSVPVNAGLQRNGKSCRLRWINYL 64
                       678*******************************************97 PP
2Myb_DNA-binding47.25.1e-1570113146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg +T eE+e +  ++++lG++ W+ Ia+ ++ gRt++++k++w++
  GSVIVT01028984001  70 RGMFTIEEEETIMALHRLLGNK-WSQIAQNFP-GRTDNEIKNYWHS 113
                        7889******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4121264IPR017930Myb domain
SuperFamilySSF466895.5E-2914111IPR009057Homeodomain-like
SMARTSM007171.6E-101666IPR001005SANT/Myb domain
PfamPF002495.2E-131764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-211871IPR009057Homeodomain-like
CDDcd001671.70E-92064No hitNo description
PROSITE profilePS5129425.27665119IPR017930Myb domain
SMARTSM007173.8E-1169117IPR001005SANT/Myb domain
PfamPF002492.4E-1370114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.7E-2572120IPR009057Homeodomain-like
CDDcd001675.22E-973112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGCNSLEKSK TKPKHRKGLW SPEEDARLRN YVLKYGLGCW SSVPVNAGLQ RNGKSCRLRW  60
INYLRPGLKR GMFTIEEEET IMALHRLLGN KWSQIAQNFP GRTDNEIKNY WHSCLKKKVV  120
KAQEMEVHMN SQCINSNSQS IDSSTSQEKP SIQLPGFESF ENMKGSSSTD TDQSIPQMLD  180
CPRVDTQESP LPKILFAEWL SLDHIYGQLF VNSGESVISK DTLDQHDPTF QDNFTHGFLL  240
NEESYVGELH HGLSNDSSSD MFSPQFKFES QTPGSGICDF VYGDEICSDF NMNGHVMY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241311923128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4285430.0AM428543.1 Vitis vinifera contig VV78X007181.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002267853.10.0PREDICTED: transcription factor LAF1
SwissprotQ9M0K46e-58LAF1_ARATH; Transcription factor LAF1
TrEMBLE0CUH50.0E0CUH5_VITVI; Uncharacterized protein
STRINGVIT_16s0050g00050.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.19e-60myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]