PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028908001
Common NameLOC100262848, VIT_16s0050g00700
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 704aa    MW: 77595.7 Da    PI: 8.6614
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028908001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-057798223
                       EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       kC++C+k F ++ n++rHir+H
  GSVIVT01028908001 77 KCEKCSKEFCSPINYRRHIRVH 98
                       7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.00627698IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.6817698IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MPVARLKDSS TSDAMKSEDG NDSLDSFIRQ AIGKEPFLSF SRAGESPVQW IQLLHALDQQ  60
DLPGWPLLSP LKVQMQKCEK CSKEFCSPIN YRRHIRVHRR TLNIDKDSTK NRNLLGAFWD  120
KLSVDEAKEV VSFKNVSLEE VSGSSIVRAL TSFVRKPGFS SLPQVYMKAG SALLDIVQSR  180
PSRFPISSQD LFSILDDASE KTFLCAGTAE SMQKYVFDGE AGKIGLEMKN LVACTCFLVE  240
QKLVKAWLAD KDAEALRCHK LLVEEEEAAQ KRQAELLERR RQKKLRQKEQ KAKEQTNGEK  300
TDSKEDITNM SEVVPTAEIS SHVATTVCET ATQSDAISPS VEPIELSNTE KDSANTTAQS  360
GIGAGYSEAG TSQNVERRVA YGVGCRHLIK MRRQVPKSQR GAPNGFHADQ NPQISKFGAI  420
QKHATHRDPR AVPVVNNNKV WTRKPKSENE GESLKSRLQR EVLNQPDQNM NCEVMIGSIS  480
VTLGNSSDQL QGENLVVARD SCTSQHPMPK KTYIQEKPIK PDSVSMKPDP AQSGTNRSTV  540
KLWRPVNRQE TGGSMPVQSG NRESEAGVAT EKGNDLTLSD ESCIRSCAMD INSSTGVNNF  600
ASQMKERPSV GGFQFSSCAA EAFLAQRWKE AIASDHVKLV IFPESEPPGC TEPASDNLVK  660
TQNNLANAGA LESSTSATVK VKFRPMSEKG IKLKYIPKKR TNT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277284ERRRQKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.164800.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4516340.0AM451634.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X116320.11, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272128.10.0PREDICTED: uncharacterized protein LOC100262848 isoform X1
RefseqXP_010662709.10.0PREDICTED: uncharacterized protein LOC100262848 isoform X1
TrEMBLE0CUZ70.0E0CUZ7_VITVI; Uncharacterized protein
STRINGVIT_16s0050g00700.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36431115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-150C2H2-like zinc finger protein