PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01028862001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C2H2 | ||||||||
Protein Properties | Length: 120aa MW: 13606.7 Da PI: 10.1376 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00037 | 30 | 49 | 1 | 18 |
EEET..TTTEEESSHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkr 18 ++Cp dC+ s++rk +L+r GSVIVT01028862001 30 FTCPvgDCHSSYRRKVHLTR 49 89****************86 PP | |||||||
2 | zf-C2H2 | 14.3 | 0.00012 | 59 | 84 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp +C+ +F +s+ krH + H GSVIVT01028862001 59 FTCPvqNCNSRFAFQSSIKRHVKEfH 84 89********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 9.0E-5 | 27 | 56 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 28 | 30 | 54 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.3E-5 | 57 | 85 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-5 | 57 | 86 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.783 | 59 | 89 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 59 | 84 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 61 | 84 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MLNGLVSGGE LPEKLHQVAS SHTTCFERPF TCPVGDCHSS YRRKVHLTRL LLKHQGKLFT 60 CPVQNCNSRF AFQSSIKRHV KEFHDESPPN NVGSKQQTIR MLRNWVWKGV QICFKVADA* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Both isoforms 1 and 2 transcripts are expressed in seedlings and both TFIIIA and TFIIIA-C are present at similar ratios in 10-day-old seedlings (at protein level). In correlation with the reorganization of 5S rDNA chromatin to a mature state, full-length isoform 1 protein TFIIIA with transcriptional activity accumulates and permits de novo transcription of 5S rRNA. Isoforms 1 and 2 transcripts accumulate in various tissues of the reproductive phase, including flowers and siliques, but only isoform 2 is present in mature seeds. In flowers, both TFIIIA and TFIIIA-C are present at similar ratios (at protein level). Very low amounts of TFIIIA are found in extracts from fresh siliques compared to TFIIIA-C. The amount of full-length TFIIIA protein progressively increases from fresh siliques to seeds concomitant with lower proportions of the shorter TFIIIA-C protein (at protein level) thus leading to 5S rRNA accumulation in the seed. {ECO:0000269|PubMed:22353599}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, flowers, siliques and seeds. {ECO:0000269|PubMed:22353599}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM452131 | 1e-148 | AM452131.2 Vitis vinifera contig VV78X126810.14, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002278827.1 | 2e-33 | PREDICTED: transcription factor IIIA | ||||
Swissprot | Q84MZ4 | 2e-19 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | F6H6C7 | 5e-74 | F6H6C7_VITVI; Uncharacterized protein | ||||
STRING | VIT_16s0050g01100.t01 | 8e-75 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2981 | 16 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 8e-22 | transcription factor IIIA |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01028862001 |