PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028208001
Common NameLOC100258912, VIT_07s0005g02260
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family SBP
Protein Properties Length: 861aa    MW: 96045.7 Da    PI: 6.4473
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028208001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.42.7e-40130207178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cqve+C adls+ak+yhrrhkvCe+hska  +lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  GSVIVT01028208001 130 VCQVEDCGADLSKAKDYHRRHKVCEMHSKAGCALVGNDMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 207
                        6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.4E-32125192IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.71128205IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.4E-37129210IPR004333Transcription factor, SBP-box
PfamPF031109.3E-29131204IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.82E-8282331IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.5E-7285312IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.82E-8665780IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.5E-7682778IPR020683Ankyrin repeat-containing domain
CDDcd002043.18E-8682779No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    Send to blast
MEAKIGGEAH HFYGIGTSDL RVVGKRSSEW DSNEWKWDGD LFIASPMNPV PSDYTSQQFF  60
PHGSAIPKRK RELEKRRRVI VVQDDNDETG TLSLKLGGHG HSVSEREVGN WEGTSGKKTK  120
LAGVSSSRAV CQVEDCGADL SKAKDYHRRH KVCEMHSKAG CALVGNDMQR FCQQCSRFHV  180
LQEFDEGKRS CRRRLAGHNK RRRKTHPDAA GNGNSLNDDQ ASGYLLISLL RILSNMHSND  240
KSDQTKDQDL LSHLLRSLAS YGGTNGSRNI SGLLQESQLL NDGISVGNTE VVSALLPNGV  300
HADEARVGNM QMTSWQIKLN NFDLNDIYID SDDGMEDLER SPVPENLGTG SLECPSWVQQ  360
DSHQSSPPQT SGNSDSASAQ SPSSSSGEAQ SRTDRIVFKL FGKEPNDFPL VLRAQILDWL  420
SHSPTDIESY IRPGCIVLTI YLRLPESTWE ELCCDLGSSL SRLLDVSNDT FWRTGWVYIR  480
VQHQIAFIYN GQVVVDMSLP LKTNNYSKIL SIKPIAISMS EEAQFLVKGF NLSRPATRLL  540
CALEGKYLVK EATHELMDDI DSVKEHDELQ YLNFSCSIPK MTGRGFIEVE DHGLSSSFFP  600
IIVAEKDVCS EICMLESTIE MTDIDEDGYL FSFKRFKWLM EFSMDRDWCA VVKKLLDIML  660
DGTVGAGEYP SLKLAFMEMG LLHRAVRRNS RPLVELLLRY VPERGGRASF LLRPDVVGPA  720
GLTPLHIAAG RDGSEDVLDA LTDDPGMVGV EAWKSARDST GFTPEDYARL RGHYSYIHLV  780
QKKINRRLGN GHVVVDQCKR CNHKVAYGNA SRSLLYRPAM LSMVAIAAVC VCVALLFKSS  840
PEVLYVFTPF RWELLDYGTS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-29125204584squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17478KRRRV
2199205KRRRKTH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.56190.0bud| flower| fruit| inflorescence| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3807880.0FQ380788.1 Vitis vinifera clone SS0ACG30YE04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652308.10.0PREDICTED: squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLF6HZE30.0F6HZE3_VITVI; Uncharacterized protein
STRINGVIT_07s0005g02260.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25951432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]