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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSVIVT01027719001 |
| Common Name | LOC100263211, VIT_05s0049g00070 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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| Family |
C2H2 |
| Protein Properties |
Length: 206aa MW: 22964.5 Da PI: 8.1255 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01027719001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.9 | 7.9e-05 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ C++ F++ L H+++H
GSVIVT01027719001 55 YTCSFCKREFRSAQALGGHMNVH 77
9********************99 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0008361 | Biological Process | regulation of cell size |
| GO:0009755 | Biological Process | hormone-mediated signaling pathway |
| GO:0010093 | Biological Process | specification of floral organ identity |
| GO:0010160 | Biological Process | formation of organ boundary |
| GO:0042127 | Biological Process | regulation of cell proliferation |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 206 aa
Download sequence Send
to blast |
MERNNFNNNL KDHSIGCRGI KDCSNNHKVK DSWNCNSGSY GEDCPDGFSW PPRSYTCSFC 60
KREFRSAQAL GGHMNVHRRD RARLRQSPPR DGQYPILNLN LNPNPNFSTS PSSSSPPTRL 120
PPFTRTLPSL VSSPLSSLSS PSSASPSDQM KTTQSSFGVG EYHGFTQEDE YKVLKKAEFV 180
RLDLEIGLLS DLKEDLDLEL RLGYS*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed early in the third whorl, and later becomes localized at the boundary between the stamen and carpel whorls. Also detected in developing ovule primordia. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcriptional regulator considered as cadastral protein that acts indirectly to prevent the B class homeotic proteins APETALA3 and perhaps PISTILLATA from acting in the gynoecial whorl. Principal function is to balance cell proliferation in the third and fourth whorls of developing flowers thereby maintaining the boundary between stamens and carpels. May fulfill this role by repressing genes implicated in cell division. Plays equally a role in the determinacy of the floral meristem. Is also required for normal ovule development. {ECO:0000269|PubMed:11006335, ECO:0000269|PubMed:11943180, ECO:0000269|PubMed:12324589, ECO:0000269|PubMed:1352237, ECO:0000269|PubMed:7477325}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by KRYPTONITE/SUVH4, member of the histone H3-K9 methyltransferase family that contributes with other factors to the CpNpG methylation of the SUP gene resulting in its silencing. The alternative epigenetic states of the SUPERMAN locus have been called Clark Kent alleles. Positively regulated at an early stage of development by LEAFY and by B class homeotic proteins APETALA3 and PISTILLATA. Later expression is maintained by both the B class homeotic proteins and the C class homeotic protein AGAMOUS. These two steps of regulation require the intervention of additional factors. {ECO:0000269|PubMed:11898023}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM435357 | 0.0 | AM435357.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X117801.19, clone ENTAV 115. |
| Publications
? help Back to Top |
- Breuil-Broyer S, et al.
Analysis of the Arabidopsis superman allelic series and the interactions with other genes demonstrate developmental robustness and joint specification of male-female boundary, flower meristem termination and carpel compartmentalization.
Ann. Bot., 2016. 117(5): p. 905-23
[PMID:27098089] - Prunet N,Yang W,Das P,Meyerowitz EM,Jack TP
SUPERMAN prevents class B gene expression and promotes stem cell termination in the fourth whorl of Arabidopsis thaliana flowers.
Proc. Natl. Acad. Sci. U.S.A., 2017. 114(27): p. 7166-7171
[PMID:28634297] - Uemura A, et al.
Regulation of floral meristem activity through the interaction of AGAMOUS, SUPERMAN, and CLAVATA3 in Arabidopsis.
Plant Reprod, 2018. 31(1): p. 89-105
[PMID:29218596] - Xu Y, et al.
SUPERMAN regulates floral whorl boundaries through control of auxin biosynthesis.
EMBO J., 2019.
[PMID:29764982]
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