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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01027508001 |
Common Name | LOC100260889, VIT_15s0048g02000 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
HD-ZIP |
Protein Properties |
Length: 772aa MW: 83910.4 Da PI: 6.1814 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01027508001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 65.7 | 6.3e-21 | 113 | 168 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ +++t++q++eLe+lF+++++p++++r eL+++l+L++rqVk+WFqNrR+++k
GSVIVT01027508001 113 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLSLETRQVKFWFQNRRTQMK 168
688999***********************************************999 PP
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2 | START | 208.1 | 3.4e-65 | 281 | 505 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79
ela++a++elvk+a+ +ep+Wv+s e++n +e++++f++ + + +e r++g+v+ ++ lve+l+d++ +W e+++ +
GSVIVT01027508001 281 ELALAAMDELVKMAQTDEPLWVRSLeggrEILNLEEYMRTFTPCIGmkpsgFVTESTRETGMVIINSLALVETLMDSN-RWAEMFPcmiaRT 371
5899**************************************9998999999**************************.************* PP
EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
+t++vissg galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + + +v +++lpSg+++++++ng+skv
GSVIVT01027508001 372 STTDVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRETSVAPTFVNCRRLPSGCVVQDMPNGYSKV 463
***************************************************************999************************** PP
EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
twveh++++++ +h+l+r+l++sg+ +ga++wvatlqrqce+
GSVIVT01027508001 464 TWVEHAEYDESAVHQLYRPLLGSGMGFGAQRWVATLQRQCEC 505
****************************************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009827 | Biological Process | plant-type cell wall modification |
GO:0042335 | Biological Process | cuticle development |
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light |
GO:0048765 | Biological Process | root hair cell differentiation |
GO:0005634 | Cellular Component | nucleus |
GO:0008289 | Molecular Function | lipid binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 772 aa
Download sequence Send
to blast |
MSFGGFLDNS SGGGGARIVA DIPYSNNMAT GAIAQPRLVS PSLAKSMFSS PGLSLALQTS 60 MEGQGEVTRL AENFESGGGR RSREDEHESR SGSDNMDGAS GDDQDAADNP PRKKRYHRHT 120 PQQIQELEAL FKECPHPDEK QRLELSRRLS LETRQVKFWF QNRRTQMKTQ LERHENSILR 180 QENDKLRAEN MSIRDAMRNP ICTNCGGPAI IGDISLEEQH LRIENARLKD ELDRVCALAG 240 KFLGRPISSL ASSMAPAMPS SSLELGVGSN GGISSTSMFL ELALAAMDEL VKMAQTDEPL 300 WVRSLEGGRE ILNLEEYMRT FTPCIGMKPS GFVTESTRET GMVIINSLAL VETLMDSNRW 360 AEMFPCMIAR TSTTDVISSG MGGTRNGALQ LMHAELQVLS PLVPVREVNF LRFCKQHAEG 420 VWAVVDVSID TIRETSVAPT FVNCRRLPSG CVVQDMPNGY SKVTWVEHAE YDESAVHQLY 480 RPLLGSGMGF GAQRWVATLQ RQCECLAILM SSTVPTRDHT AAITAGGRRS MLKLAQRMTD 540 NFCAGVCAST VHKWNKLCAG NVDEDVRVMT RKSVDDPGEP PGIVLSAATS VWLPVSPQRL 600 FDFLRDERLR SEWDILSNGG PMQEMAHIAK GQDHGNCVSL LRASAMNANQ SSMLILQETC 660 IDAAGSLVVY APVDIPAMHV VMNGGDSAYV ALLPSGFAIV PDGPGSRGPN SGVHTNSGGP 720 NRVSGSLLTV AFQILVNSLP TAKLTVESVE TVNNLISCTV QKIKAALHCE S*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM459307 | 0.0 | AM459307.2 Vitis vinifera contig VV78X101111.6, whole genome shotgun sequence. |