PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027475001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 995aa    MW: 110673 Da    PI: 7.8715
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027475001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.42.1e-43641911128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lp+G+ F+Ptdeelv++yLk k++gk+ e+ ++i+ vd++k+ePw+Lp  +++k+ + +w+fFs+ d ky++g++ nr+t++g+Wk tg+d+
  GSVIVT01027475001  64 LPVGCGFRPTDEELVNHYLKLKIQGKDSEV-QIIPVVDVCKSEPWELPdlSRIKTADPDWFFFSPVDLKYSNGSHVNRQTEAGFWKPTGQDR 154
                        799************************999.89**************96448999999********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ev+s +++++g+kk+Lvf+kgr + +++t+Wv+h+yr 
  GSVIVT01027475001 155 EVKS-GTNKIGTKKSLVFHKGRGRAAVRTNWVIHQYRT 191
                        ****.999****************************96 PP
2NAM1484.8e-466828111128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lp+GfrF Ptdeelv+++Lk k+ g + ++ ++i+evdi+k+ePw+Lp  + +k+++ ew+fFs  d ky++g+r+nrat++gyWk tg+d+
  GSVIVT01027475001 682 LPVGFRFYPTDEELVDNHLKLKILGMESPV-DIIPEVDICKWEPWELPvfSVIKTDDPEWFFFSLLDYKYSNGSRSNRATSAGYWKPTGQDR 772
                        79*************************999.99***************6447888889********************************** PP

                NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++s  ++e++g+kktLvfy+gr + + +t+Wv+heyr+
  GSVIVT01027475001 773 DIFSGtNKEVIGTKKTLVFYRGRGRGAIRTNWVIHEYRA 811
                        ***9878888***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-4860210IPR003441NAC domain
PROSITE profilePS5100546.04564210IPR003441NAC domain
PfamPF023656.0E-2265190IPR003441NAC domain
SuperFamilySSF1019414.05E-52673830IPR003441NAC domain
PROSITE profilePS5100550.87682830IPR003441NAC domain
PfamPF023652.7E-22683810IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 995 aa     Download sequence    Send to blast
MRGWLRKGIK VFVYGKSSGI KMYKSERVID RLHHPPSTNS RSVCLFYCEL SMSVDMINDI  60
LKLLPVGCGF RPTDEELVNH YLKLKIQGKD SEVQIIPVVD VCKSEPWELP DLSRIKTADP  120
DWFFFSPVDL KYSNGSHVNR QTEAGFWKPT GQDREVKSGT NKIGTKKSLV FHKGRGRAAV  180
RTNWVIHQYR TDIAGLPANR AYVLCHLMKK TDENTGPDEA VAGSGNGLAN NMTLGAGLSH  240
HASDIVSDIG NYQVEEMILD GDPELEGLLH EPTIHPLDYD LFHHTEQGLD LDLSSSSGYN  300
NSCGSMQFQD EDDAEFVDGL FIDPDGYPCG GLSDERSSAV YGSIGRLSAR PQSPLKGAYV  360
KGSRSATYTE VLHVKPSLSQ EASSRVVSSS KECMQSPMAQ QQHSASGSFS INQQRLANSV  420
AQGVAPKSVK LEGNDLNNEI LLAKLAKLSG SMTKSEENSV SIKAKDRAEY GSATDLLQSK  480
NPIRESKKDC EVPEKANPKL SSMTRLNEPV GSTQKGSFNS PETTSASHEP SSSPAQLVNF  540
LTGIILFVIL IVVMVLDFIA KISLESTSHP LITKKIHTVK KHVCFLSSME ISYSKFCKDM  600
THIVGLVGKC FIWSEDYLLW ITTRPEQNKR NERMCARTRP NLGAKFVKFP FIIKLGYECL  660
YTNSNVVLDI PLIMIATILE TLPVGFRFYP TDEELVDNHL KLKILGMESP VDIIPEVDIC  720
KWEPWELPVF SVIKTDDPEW FFFSLLDYKY SNGSRSNRAT SAGYWKPTGQ DRDIFSGTNK  780
EVIGTKKTLV FYRGRGRGAI RTNWVIHEYR ANIAGLPANR AYVLCRLKRK TDENTGSDIP  840
IPDEANGLAN NMTLGAGPSH YASNIASNTR NYQVEDMTLE YSQLLQASSL TSGLSPKECV  900
QSPMDRPTSR LSSINQHRRE NKSLLHDESR RFDAPSIERL DNFVAQRVAP KSLKLTGNAS  960
NNETLIAKLT KLSCSMTKPE EKSVSIKDRT SFCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-356483315171Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.13420.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4393720.0AM439372.2 Vitis vinifera contig VV78X219870.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661536.10.0PREDICTED: NAC domain-containing protein 62-like isoform X1
TrEMBLF6I3040.0F6I304_VITVI; Uncharacterized protein
STRINGVIT_15s0048g02280.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.19e-60NAC transcription factor-like 9