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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01027473001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NAC | ||||||||
Protein Properties | Length: 456aa MW: 51587.7 Da PI: 5.3227 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 139.2 | 2.5e-43 | 14 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp+GfrFhPtdeelv+++Lk+k+ g + ++ e+i+evdi+k+ePw+Lp +++++ ew+fFs+ +kky++g++ +ratk+gyWk tg + GSVIVT01027473001 14 LPVGFRFHPTDEELVDRHLKPKILGMDSQV-EIIPEVDICKWEPWELPgFsVLQTDDLEWFFFSPLHKKYQNGSQFKRATKAGYWKPTGLGR 104 79*************************999.89***************6336667777********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ls+ ++e++g++ktL fy+gr + ++ t+Wv+ +y+ GSVIVT01027473001 105 DILSRtNKEVIGTRKTLNFYEGRGRAAVLTNWVIYQYQY 143 ****978889***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-49 | 10 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.972 | 14 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-20 | 15 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MSVGETIGAI LETLPVGFRF HPTDEELVDR HLKPKILGMD SQVEIIPEVD ICKWEPWELP 60 GFSVLQTDDL EWFFFSPLHK KYQNGSQFKR ATKAGYWKPT GLGRDILSRT NKEVIGTRKT 120 LNFYEGRGRA AVLTNWVIYQ YQYHRSDIAS LPSKRAYVLC RLKRKKDKKT GSYIPTPDEA 180 VAGTGIHLNG PANNMTLDAG PSHHFSDIAS DIRNYQVEEM TSDEDPQLPG LLNDIPFTPL 240 DSDWFSDTEQ GLDLDLPSPS GFNNSYGNMQ FEDGVDTEFA DSLIVDPDEY HCEGLTGQRI 300 SAVDSWNLNH GFAKDRAEYG SVIDLLQNKN PIREFKKDSE VTEKANPNLS SIWNESVGMN 360 QKGSFSSPET ASASHEPSST PAFAMRYQPA SHNQKNSHSE EASRKRSMCV FFWLHGDILN 420 SRFCKNSLYI VGHVGKCFIW SEDYFLWIYN YVCCL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-30 | 1 | 166 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-30 | 1 | 166 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-30 | 1 | 166 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-30 | 1 | 166 | 4 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-30 | 1 | 166 | 7 | 169 | NAC domain-containing protein 19 |
3swm_B | 8e-30 | 1 | 166 | 7 | 169 | NAC domain-containing protein 19 |
3swm_C | 8e-30 | 1 | 166 | 7 | 169 | NAC domain-containing protein 19 |
3swm_D | 8e-30 | 1 | 166 | 7 | 169 | NAC domain-containing protein 19 |
3swp_A | 8e-30 | 1 | 166 | 7 | 169 | NAC domain-containing protein 19 |
3swp_B | 8e-30 | 1 | 166 | 7 | 169 | NAC domain-containing protein 19 |
3swp_C | 8e-30 | 1 | 166 | 7 | 169 | NAC domain-containing protein 19 |
3swp_D | 8e-30 | 1 | 166 | 7 | 169 | NAC domain-containing protein 19 |
4dul_A | 7e-30 | 1 | 166 | 4 | 166 | NAC domain-containing protein 19 |
4dul_B | 7e-30 | 1 | 166 | 4 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.25424 | 0.0 | bud| flower |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM439372 | 1e-156 | AM439372.2 Vitis vinifera contig VV78X219870.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010661528.1 | 0.0 | PREDICTED: protein NTM1-like 9 | ||||
TrEMBL | F6I302 | 0.0 | F6I302_VITVI; Uncharacterized protein | ||||
STRING | VIT_15s0048g02300.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 2e-51 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01027473001 |