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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01027472001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NAC | ||||||||
Protein Properties | Length: 219aa MW: 24590.8 Da PI: 6.9826 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 149.4 | 1.7e-46 | 9 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp+GfrF Ptdeelv++yL+ k+ g + e+ e+i+evd++k+ePw++p + +k+++ ew+fFs d ky++g+r+nrat++gyWk tg+d+ GSVIVT01027472001 9 LPVGFRFAPTDEELVDKYLTWKILGMDSEV-EIIPEVDVCKWEPWEIPgfSVIKTDDPEWFFFSLLDYKYSNGSRSNRATNAGYWKPTGQDR 99 79*************************999.99***************6447888889********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s ++e++g+kktLvfy+gr + + +t+Wv+hey+ GSVIVT01027472001 100 GIFSGtNKEVIGTKKTLVFYRGRGRGAIRTNWVIHEYHT 138 ***9878888***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-53 | 5 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.726 | 9 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-23 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MIGRDLETLP VGFRFAPTDE ELVDKYLTWK ILGMDSEVEI IPEVDVCKWE PWEIPGFSVI 60 KTDDPEWFFF SLLDYKYSNG SRSNRATNAG YWKPTGQDRG IFSGTNKEVI GTKKTLVFYR 120 GRGRGAIRTN WVIHEYHTNI ASLPANRAYV LCRLKRKTDE NTESDIPTPD GDVAGGFSPE 180 INFNGVLSCQ FTCGHTLVCG SYCSHCARHQ CKGLKAFA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-36 | 8 | 157 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-36 | 8 | 157 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-36 | 8 | 157 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-36 | 8 | 157 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 8e-36 | 8 | 157 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-36 | 8 | 157 | 16 | 165 | NAC domain-containing protein 19 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.25424 | 0.0 | bud| flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:18443413}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:18443413}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM439372 | 1e-149 | AM439372.2 Vitis vinifera contig VV78X219870.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010661529.1 | 1e-125 | PREDICTED: protein NTM1-like 9 isoform X1 | ||||
Refseq | XP_019081130.1 | 1e-125 | PREDICTED: protein NTM1-like 9 isoform X1 | ||||
Swissprot | F4JN35 | 5e-61 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | A0A438HL45 | 1e-126 | A0A438HL45_VITVI; Protein NTM1-like 9 | ||||
STRING | VIT_15s0048g02290.t01 | 1e-106 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP9281 | 3 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 2e-63 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01027472001 |
Publications ? help Back to Top | |||
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