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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01027467001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NAC | ||||||||
Protein Properties | Length: 129aa MW: 14764 Da PI: 10.0079 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.1 | 7.5e-19 | 50 | 128 | 50 | 125 |
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy..kgrapkgektdWvmhe 125 k+++ ew+fFs+ kky++ ++ +r+t+ gyWk tg +++++ ++e++g+kktLvf+ g+ + + t Wv+he GSVIVT01027467001 50 KIQTYGPEWFFFSPLYKKYRKRNQLQRTTNVGYWKPTGPARDIKRGvTEEVIGTKKTLVFHmgGGHGHADVTTGWVIHE 128 5566677************************************99878899**********5435778888*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.353 | 1 | 128 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-11 | 46 | 128 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.36E-19 | 55 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MRLKCFFFPS FFPQGNALPD RPPSYDLATD SDACLYKELT PQMRSAVFLK IQTYGPEWFF 60 FSPLYKKYRK RNQLQRTTNV GYWKPTGPAR DIKRGVTEEV IGTKKTLVFH MGGGHGHADV 120 TTGWVIHE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM469554 | 1e-131 | AM469554.2 Vitis vinifera contig VV78X143304.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002268978.2 | 1e-22 | PREDICTED: NAC domain-containing protein 91-like | ||||
TrEMBL | F6I2Z9 | 3e-52 | F6I2Z9_VITVI; Uncharacterized protein | ||||
STRING | VIT_15s0048g02340.t01 | 6e-53 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.2 | 1e-19 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01027467001 |