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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01027463001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
B3 |
Protein Properties |
Length: 376aa MW: 41085 Da PI: 7.6562 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01027463001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 100.2 | 1.2e-31 | 95 | 199 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87
f+kv tpsdv+k++rlv+pk++ae++ ++ + ++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+
GSVIVT01027463001 95 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSASDKGLLLNFEDRDGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFERGvGE 186
89**************************99444557889************************************************66577 PP
.SEE..EEEEE-S CS
B3 88 .sefelvvkvfrk 99
+ +l++ ++r+
GSVIVT01027463001 187 sGKDRLYIDWRRR 199
7888999999997 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 376 aa
Download sequence Send
to blast |
MRRTRQFMGV APEPYRYEQQ QQQRAWLGTS EPEEEAARSY DRAALELGGP DGVTDSSRKL 60 EFVNLSLRNN EDGDGGGGCS SSVGGGVCVE REHMFDKVVT PSDVGKLNRL VIPKQHAEKY 120 FPLDSSASDK GLLLNFEDRD GKPWRFRYSY WNSSQSYVMT KGWSRFVKEK KLDAGDIVSF 180 ERGVGESGKD RLYIDWRRRP DAPDPTSLSH LHLPTQLPFS QSVRWGRLYS LPQSPNTLGG 240 GYHDYNAVTS GSGSLYYLSS SSSSHQIGAV QQGGDAPMVI NSVPVVHGKT TAKRLRLFGV 300 NMECSTPDDH PECNILPSTA IPHVTMASLS PHLPSSSLPP LQLRLFNGSP LQAVNVLAAA 360 SLGTLAGGAQ KVTEL*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 5e-65 | 90 | 200 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-65 | 90 | 200 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM424805 | 0.0 | AM424805.2 Vitis vinifera contig VV78X270230.10, whole genome shotgun sequence. |
GenBank | FQ383781 | 0.0 | FQ383781.1 Vitis vinifera clone SS0ABG16YE21. |
Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Lee BH, et al.
The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] - Lozano-Sotomayor P, et al.
Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] - Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] - Sato H, et al.
Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]
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