PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027004001
Common NameVIT_15s0046g01790
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 595aa    MW: 67802.4 Da    PI: 6.4512
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027004001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07488536247
                        SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                        ++W++eE +++++ v++ ++      W+ I + +  ++++++++s+++++
  GSVIVT01027004001 488 LSWSEEEKKRFKEIVRLNPPSmgvrFWDEIFKSFS-TKSREDLVSYYFNV 536
                        58*****************88**************.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010144.3E-1049141No hitNo description
PROSITE profilePS5101116.78252145IPR001606ARID DNA-binding domain
SMARTSM005011.4E-1353146IPR001606ARID DNA-binding domain
SuperFamilySSF467744.97E-1757147IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.605.2E-1361146IPR001606ARID DNA-binding domain
PfamPF013885.8E-1073138IPR001606ARID DNA-binding domain
SMARTSM011892.2E-5390441IPR000949ELM2 domain
CDDcd001672.44E-5489537No hitNo description
PfamPF002498.0E-6489536IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016575Biological Processhistone deacetylation
GO:0048235Biological Processpollen sperm cell differentiation
GO:0000118Cellular Componenthistone deacetylase complex
GO:0048555Cellular Componentgenerative cell nucleus
GO:0048556Cellular Componentmicrosporocyte nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MCTRPRWLIG WSMIADGSAL DCVKILKPQE NGLWFVLEPG SKGIVVGGGG ISELRCSFDQ  60
FLGPFLKQIR GHNSYRPLPP MLGNGQCVDL FKLFLLVKEK GGYRTVSENV LWNLVAEESG  120
LDSGVGSALK LVYIKYLDLL DRWLDRIFKD KKSHGSLSVC GDTSGRLLME LETEFKGFLP  180
EILDQKMKDE EYPHFDLAKS ESSFSGVENL YCNDEVKSDV KVESEGGVKC VDDNDEVKSS  240
VKLELDLNRK CVDDDEDVMI LDLNEVNEEV FTRKRKREYM LGMLNWVTTI AKNPCDPSIG  300
KLPERSKWKL TGPGELWKQV LLVREALFLQ RDVDLSAEQS IWQKKQKMHP SMYEDHAGSE  360
RLRYSQRLLS GKRSRSRASG LCGDSHVRKR PVGPAFQATI PEWTGVVSEI DSKWLGTRVW  420
PLDKIEHKFL IERDPIGKGR QDSCGCQFPG SIACVQFHVA EKRIRIKLEL GSAFQHWQFD  480
KMGEVVGLSW SEEEKKRFKE IVRLNPPSMG VRFWDEIFKS FSTKSREDLV SYYFNVFLLQ  540
RRADQNRLTP NNIDSDDDES EFGPLSNGFG HEAINLPSSI LYAQNNPHMN FRDC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371376KRSRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.160710.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4524480.0AM452448.2 Vitis vinifera contig VV78X230125.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661850.10.0PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1
TrEMBLF6I6720.0F6I672_VITVI; Uncharacterized protein
STRINGVIT_15s0046g01790.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP301445