PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01026920001
Common NameLOC100246489, VIT_15s0046g02640
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family BES1
Protein Properties Length: 658aa    MW: 73942.7 Da    PI: 7.0178
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01026920001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822142.92.9e-44321742136
             DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl....eeaeaagssas.. 87 
                        g++r ++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V+ AL+reAGwvv +DGtt++  ++ +     ++ a+++s+s  
  GSVIVT01026920001  32 GGRRCRPVEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVISALAREAGWVVLPDGTTFPSRTQVPrpagGTSTAVVTSSSsh 123
                        78999***************************************************************966554435573444444333334 PP

             DUF822  88 .aspesslq.sslkssalaspvesysaspksssfpspssldsislasaasl 136
                         ++++++ + ++ +ss  +s ve  ++++k + +p++s +d  +++ ++s 
  GSVIVT01026920001 124 lVQQQTPPTsLRGVSSGYRSSVEYNASRMKGVFVPASSPYDVSPSSRSHSA 174
                        56677776668999***************************9988755444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.2E-3832175IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514453.64E-183214653IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.2E-200217651IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.1E-106223641IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-69254268IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-69275293IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-69297318IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060301309IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008427.6E-8380389IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.6E-69390412IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-69463482IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-69497513IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-69514525IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.6E-69532555IPR001554Glycoside hydrolase, family 14
PRINTSPR008427.6E-8535545IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007501.6E-69572594IPR001554Glycoside hydrolase, family 14
PRINTSPR008427.6E-8623637IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008427.6E-8638652IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MVSVDGAFVS SSGNNRFQHH QQIQEQGGNQ SGGRRCRPVE EKERTKLRER HRRAITARIL  60
AGLRRHGNYN LRVRADINDV ISALAREAGW VVLPDGTTFP SRTQVPRPAG GTSTAVVTSS  120
SSHLVQQQTP PTSLRGVSSG YRSSVEYNAS RMKGVFVPAS SPYDVSPSSR SHSAVVMGDR  180
GGQAENHPLI GGSMDAVDDK QVVDMPPKLQ ERDFAGTPYI PVYVMLPLGV ISMKCELVDP  240
DGLLKQLRIL KSVNVDGVMV DCWWGIVEAH APQEYNWNGY KRLFQIVREL KLKLQVVLSF  300
HECGGNVGDD VCIPLPHWVA EIGRSNPDIF FTDREGRRNP ECLSWGIDKE RNLRGRTAVE  360
VYFDFMRSFR VEFDDFFEDG IISMIEVGLG PCGELRYPSY PVKHGWRYPG IGEFQCYDQY  420
LLKNLRKAAE ARGHAFWARG PDNVGSYNSQ PHETGFFCDG GDYDGYYARF FLNWYSQVLV  480
DHGDRVLSLA KLAFEGTSIA AKLAGVHWWY KTTSHAAELM AGFYNPCNRD GYAAVMAMLK  540
KHGAALNFTC AELHMLNRHE DFPEAMADPE GLAWQVLNAA WDVCIPVVSE NALLTHDRES  600
YNKILENAKP LNDPDGRHFS SFTYLRLSPL LMERHNFLEF ERFVKRMHGE AVLDLQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1uko_A1e-15221965011444Beta-amylase
1uko_B1e-15221965011444Beta-amylase
1uko_C1e-15221965011444Beta-amylase
1uko_D1e-15221965011444Beta-amylase
1ukp_A1e-15221965011444Beta-amylase
1ukp_B1e-15221965011444Beta-amylase
1ukp_C1e-15221965011444Beta-amylase
1ukp_D1e-15221965011444Beta-amylase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273843.10.0PREDICTED: beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLF6I6260.0F6I626_VITVI; Beta-amylase
STRINGVIT_15s0046g02640.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4345912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]