PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01026920001 | ||||||||
Common Name | LOC100246489, VIT_15s0046g02640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | BES1 | ||||||||
Protein Properties | Length: 658aa MW: 73942.7 Da PI: 7.0178 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 142.9 | 2.9e-44 | 32 | 174 | 2 | 136 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl....eeaeaagssas.. 87 g++r ++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V+ AL+reAGwvv +DGtt++ ++ + ++ a+++s+s GSVIVT01026920001 32 GGRRCRPVEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVISALAREAGWVVLPDGTTFPSRTQVPrpagGTSTAVVTSSSsh 123 78999***************************************************************966554435573444444333334 PP DUF822 88 .aspesslq.sslkssalaspvesysaspksssfpspssldsislasaasl 136 ++++++ + ++ +ss +s ve ++++k + +p++s +d +++ ++s GSVIVT01026920001 124 lVQQQTPPTsLRGVSSGYRSSVEYNASRMKGVFVPASSPYDVSPSSRSHSA 174 56677776668999***************************9988755444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 1.2E-38 | 32 | 175 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 3.64E-183 | 214 | 653 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 1.2E-200 | 217 | 651 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 1.1E-106 | 223 | 641 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.6E-69 | 254 | 268 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.6E-69 | 275 | 293 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.6E-69 | 297 | 318 | IPR001554 | Glycoside hydrolase, family 14 |
PROSITE pattern | PS00506 | 0 | 301 | 309 | IPR018238 | Glycoside hydrolase, family 14, conserved site |
PRINTS | PR00842 | 7.6E-8 | 380 | 389 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 1.6E-69 | 390 | 412 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.6E-69 | 463 | 482 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.6E-69 | 497 | 513 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.6E-69 | 514 | 525 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 1.6E-69 | 532 | 555 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 7.6E-8 | 535 | 545 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 1.6E-69 | 572 | 594 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 7.6E-8 | 623 | 637 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00842 | 7.6E-8 | 638 | 652 | IPR001371 | Glycoside hydrolase, family 14B, plant |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MVSVDGAFVS SSGNNRFQHH QQIQEQGGNQ SGGRRCRPVE EKERTKLRER HRRAITARIL 60 AGLRRHGNYN LRVRADINDV ISALAREAGW VVLPDGTTFP SRTQVPRPAG GTSTAVVTSS 120 SSHLVQQQTP PTSLRGVSSG YRSSVEYNAS RMKGVFVPAS SPYDVSPSSR SHSAVVMGDR 180 GGQAENHPLI GGSMDAVDDK QVVDMPPKLQ ERDFAGTPYI PVYVMLPLGV ISMKCELVDP 240 DGLLKQLRIL KSVNVDGVMV DCWWGIVEAH APQEYNWNGY KRLFQIVREL KLKLQVVLSF 300 HECGGNVGDD VCIPLPHWVA EIGRSNPDIF FTDREGRRNP ECLSWGIDKE RNLRGRTAVE 360 VYFDFMRSFR VEFDDFFEDG IISMIEVGLG PCGELRYPSY PVKHGWRYPG IGEFQCYDQY 420 LLKNLRKAAE ARGHAFWARG PDNVGSYNSQ PHETGFFCDG GDYDGYYARF FLNWYSQVLV 480 DHGDRVLSLA KLAFEGTSIA AKLAGVHWWY KTTSHAAELM AGFYNPCNRD GYAAVMAMLK 540 KHGAALNFTC AELHMLNRHE DFPEAMADPE GLAWQVLNAA WDVCIPVVSE NALLTHDRES 600 YNKILENAKP LNDPDGRHFS SFTYLRLSPL LMERHNFLEF ERFVKRMHGE AVLDLQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1uko_A | 1e-152 | 219 | 650 | 11 | 444 | Beta-amylase |
1uko_B | 1e-152 | 219 | 650 | 11 | 444 | Beta-amylase |
1uko_C | 1e-152 | 219 | 650 | 11 | 444 | Beta-amylase |
1uko_D | 1e-152 | 219 | 650 | 11 | 444 | Beta-amylase |
1ukp_A | 1e-152 | 219 | 650 | 11 | 444 | Beta-amylase |
1ukp_B | 1e-152 | 219 | 650 | 11 | 444 | Beta-amylase |
1ukp_C | 1e-152 | 219 | 650 | 11 | 444 | Beta-amylase |
1ukp_D | 1e-152 | 219 | 650 | 11 | 444 | Beta-amylase |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002273843.1 | 0.0 | PREDICTED: beta-amylase 7 | ||||
Swissprot | O80831 | 0.0 | BAM7_ARATH; Beta-amylase 7 | ||||
TrEMBL | F6I626 | 0.0 | F6I626_VITVI; Beta-amylase | ||||
STRING | VIT_15s0046g02640.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP4345 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45880.1 | 0.0 | beta-amylase 7 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01026920001 |
Entrez Gene | 100246489 |
Publications ? help Back to Top | |||
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