 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
GSVIVT01026574001 |
| Common Name | VIT_04s0044g00620 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
| Family |
GRAS |
| Protein Properties |
Length: 400aa MW: 45423.9 Da PI: 4.6922 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01026574001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 96.5 | 4e-30 | 118 | 245 | 2 | 132 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90
+lLl+ Aeav++++ la++++ +l++l +g + ++Rla +ft++L r + +e p +++ +++ ++++a+++++e+sP+
GSVIVT01026574001 118 ADLLLAGAEAVEAQNWPLASSIILKLNDLllHQAKGdNQFNRLALFFTQGLYYRSIS-APE-----MPLQKPVSRQPNTMSAFQMLQELSPY 203
679*************************98855555489*************99988.222.....333333445678899*********** PP
GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaL 132
+kf+h+taNqaIlea+eg ++vH+iDfdi++G+Q +++++++
GSVIVT01026574001 204 VKFAHFTANQAILEAAEGGQEVHVIDFDIMEGIQSLSFIKTF 245
*************************************99875 PP
|
| 2 | GRAS | 77.2 | 2.9e-24 | 243 | 392 | 225 | 373 |
GRAS 225 devLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhet 311
+++L v +lsPk+vv+ve++ ++ + sF+e f+eal++y+a+ dsl ++++ + +E+e+l+++i n + + e +++
GSVIVT01026574001 243 KTFLGGVSKLSPKIVVLVEEDlfnfCKIPTMSFVEFFCEALHHYAAFSDSLMSSFSGIYkVGLRLIEEEFLRNRIWNSLRQFPCE----KKE 330
689******************99888999**********************6666554426778899999*********999999....555 PP
GRAS 312 lekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
++ W++ + + Fkp+pls+ +++qak l+ ++++ y v++e+ l l+Wk+rpL+++S W
GSVIVT01026574001 331 KSLWEDGFASlKRFKPIPLSSCNVAQAKFLVGLFSGE-YWVKHENCRLALCWKSRPLTTASIW 392
778*****98568**********************77.************************* PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 400 aa
Download sequence Send
to blast |
MAYEQIPYPL EPSYNEKPLD CSLETVFSFQ TEDPICPKTI QDGIFHDQDM ERLFQVEDGL 60
LDFNSIHGDH IMGLERAEET KMGYDASQEA PEQVDFLADE SSHLNGIQEE LMEDCGLADL 120
LLAGAEAVEA QNWPLASSII LKLNDLLLHQ AKGDNQFNRL ALFFTQGLYY RSISAPEMPL 180
QKPVSRQPNT MSAFQMLQEL SPYVKFAHFT ANQAILEAAE GGQEVHVIDF DIMEGIQSLS 240
FIKTFLGGVS KLSPKIVVLV EEDLFNFCKI PTMSFVEFFC EALHHYAAFS DSLMSSFSGI 300
YKVGLRLIEE EFLRNRIWNS LRQFPCEKKE KSLWEDGFAS LKRFKPIPLS SCNVAQAKFL 360
VGLFSGEYWV KHENCRLALC WKSRPLTTAS IWIHAHFKK*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AM460536 | 0.0 | AM460536.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X247367.48, clone ENTAV 115. |
