 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
GSVIVT01026481001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
| Family |
MYB |
| Protein Properties |
Length: 345aa MW: 39566.4 Da PI: 9.7436 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01026481001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 54.6 | 2.5e-17 | 17 | 62 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ede+l ++v q+G+++W++Ia ++ gR++k+c++rw++
GSVIVT01026481001 17 RGHWRPAEDEKLRQLVDQYGPHNWNSIADKLE-GRSGKSCRLRWFNQ 62
899*****************************.***********996 PP
|
| 2 | Myb_DNA-binding | 59.3 | 8.5e-19 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
r+++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++++
GSVIVT01026481001 69 RKPFTEEEEERLLAAHRIHGNK-WSLIARLFP-GRTDNAVKNHYHV 112
789*******************.*********.***********86 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MEDSAGGSSD DGRNCQRGHW RPAEDEKLRQ LVDQYGPHNW NSIADKLEGR SGKSCRLRWF 60
NQLDPRINRK PFTEEEEERL LAAHRIHGNK WSLIARLFPG RTDNAVKNHY HVIMARRHRE 120
RLRQCSKRSC QDHPNDSNTN PSSFFLKFSR PQLEYNTKLG FPDFQNHERN GIFPVSFSKS 180
LPSWTHSGST NNPNSLRLDK IFGASSSSCS KEPSHNGLDQ SLSSYYSNSS SYGSYRNLSS 240
LGMPYLGDDR GIHGAMKNKL VKLSDNSTTF PKLRIITEQK QEESIKSTDL FSFSYTCSCL 300
CPLNLRLVNW NFRNNTQRCL QHSFVVIHIY IIRAAILMFN LITV*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AM456989 | 0.0 | AM456989.1 Vitis vinifera contig VV78X104387.6, whole genome shotgun sequence. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP5 | 17 | 1784 |
