PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01026222001
Common NameLOC100263121, VIT_10s0042g00940
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 258aa    MW: 29105.2 Da    PI: 9.3217
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01026222001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.21.9e-172199272
           trihelix  2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72
                       Wt +e++ Liea++ +++r  +++         ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e++  
  GSVIVT01026222001 21 WTVNETMILIEAKKMDDQRRMKRSgenegrskPAELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVRDYERRLL 99
                       *************9777666643222333333999***************************************99864 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0731385IPR017877Myb-like domain
PfamPF138376.9E-132095No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MADQGGSSAV TVMRDYRKGN WTVNETMILI EAKKMDDQRR MKRSGENEGR SKPAELRWKW  60
VEDYCWRKGC LRSQNQCNDK WDNLMRDYKK VRDYERRLLS ERGDSGDHDG GPSSSSSYWM  120
IDKNERKEKN LPSNMLRQIY EGLVEVVERK GVGTTSSAAA AAHQRVMSVS VAALPPPPPL  180
PPPPSAPQPP QQPQQPHIAY PQPLPSLAQI LIQVSIQTHQ QSGGEEVVEK AQVVVLLLQV  240
EAPQLKWVLQ FQKVLPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4562550.0AM456255.2 Vitis vinifera contig VV78X217219.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019078042.11e-146PREDICTED: uncharacterized protein LOC100263121 isoform X3
TrEMBLF6HIS41e-153F6HIS4_VITVI; Uncharacterized protein
STRINGVIT_10s0042g00940.t011e-153(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18811637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.17e-61Trihelix family protein