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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSVIVT01026222001 |
Common Name | LOC100263121, VIT_10s0042g00940 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family |
Trihelix |
Protein Properties |
Length: 258aa MW: 29105.2 Da PI: 9.3217 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSVIVT01026222001 | genome | Genoscope | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 55.2 | 1.9e-17 | 21 | 99 | 2 | 72 |
trihelix 2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72
Wt +e++ Liea++ +++r +++ ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e++
GSVIVT01026222001 21 WTVNETMILIEAKKMDDQRRMKRSgenegrskPAELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVRDYERRLL 99
*************9777666643222333333999***************************************99864 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MADQGGSSAV TVMRDYRKGN WTVNETMILI EAKKMDDQRR MKRSGENEGR SKPAELRWKW 60 VEDYCWRKGC LRSQNQCNDK WDNLMRDYKK VRDYERRLLS ERGDSGDHDG GPSSSSSYWM 120 IDKNERKEKN LPSNMLRQIY EGLVEVVERK GVGTTSSAAA AAHQRVMSVS VAALPPPPPL 180 PPPPSAPQPP QQPQQPHIAY PQPLPSLAQI LIQVSIQTHQ QSGGEEVVEK AQVVVLLLQV 240 EAPQLKWVLQ FQKVLPL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AM456255 | 0.0 | AM456255.2 Vitis vinifera contig VV78X217219.6, whole genome shotgun sequence. |