PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025803001
Common NameVIT_08s0040g00750
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C2H2
Protein Properties Length: 322aa    MW: 34967.6 Da    PI: 9.143
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025803001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.7e-057294123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       + C++C+k F ++  L  H++ H
  GSVIVT01025803001 72 FYCKYCNKKFANSQALGGHQNAH 94
                       79******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-46998IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.99E-66998No hitNo description
PfamPF121718.4E-57292IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.6767299IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTLATSPCGG AQEKKEAQGQ EGPVREDLDH ALDLRLSSDV VGEREHVSKH DGPKGSESAN  60
GVDQNGDEKR DFYCKYCNKK FANSQALGGH QNAHKRERGS TKKDKVDQEA LAHIESHLYS  120
YSSIVPYNRH YGSYSKPLGI QSQSMINKPL HSWSRGGLGY GYGGVGGWSR YSMMNHGQFP  180
MMNCTRQPSM VNQQYGTQPS PRTNSYWGGS GVGVGGGGYQ QPPPPPSQAR QFNIAGYQQP  240
PPPQNRGFNL SGTTAFRPPF EGAYLQIGTS RSVDNRIDGS AEYRAGQRGS VAENPGQEVG  300
GSLLEKGKQQ QAKDIDLTLK L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4352930.0AM435293.2 Vitis vinifera contig VV78X167740.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD7TQV90.0D7TQV9_VITVI; Uncharacterized protein
STRINGVIT_08s0040g00750.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.14e-13C2H2 family protein