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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSVIVT01025658001 |
| Common Name | LOC100243175, VIT_08s0040g02100 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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| Family |
C2H2 |
| Protein Properties |
Length: 470aa MW: 50880.3 Da PI: 9.476 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01025658001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.3 | 2.8e-05 | 63 | 85 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C+k F r nL+ H r H
GSVIVT01025658001 63 FICEICNKGFQRDQNLQLHRRGH 85
89*******************88 PP
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| 2 | zf-C2H2 | 12.9 | 0.00034 | 139 | 161 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k + +s+ k H +t+
GSVIVT01025658001 139 WKCEKCSKKYAVQSDWKAHSKTC 161
58*****************9998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010075 | Biological Process | regulation of meristem growth |
| GO:0045604 | Biological Process | regulation of epidermal cell differentiation |
| GO:0048364 | Biological Process | root development |
| GO:0051302 | Biological Process | regulation of cell division |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 470 aa
Download sequence Send
to blast |
MQMMSGDMFS IPSSIRTFAQ DPDANPNNLK PPPKKKRNLP GTPDPDAEVI ALSPKTLMAT 60
NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRSNKEVR KKVYICPEKT CVHHDPSRAL 120
GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYKCDC GTLFSRKDSF 180
ITHRAFCDAL AEERARITSV AATNLNFRND SMNETVINPQ PGLLNGFSGR GGPDAAGISQ 240
FCPGFGPDLT GLPEMVQVAA SNLFGSSSVG NFGSCNESPW LDKSSATSNG ANLSLASLPH 300
ALKEEEGNKG SMVETLTSLY SGNHSQQSSP AAPMSATALL QKAAQMGSTR SNPSFFGNSF 360
GVMNSSGSHS TTLNTLTHNR NELHQVFGTG KQHENLMATA SLSEGTSGKQ TEPVPLKLHL 420
GSNSVENSLT RDFLGMGGGE SGRPFLPQEL AKFASMGSAM GLSHFTSNH*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 89 | 101 | KLKQRSNKEVRKK |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Start to accumulate during the 16- to 32-cell stage of embryogenesis. {ECO:0000269|PubMed:17785527}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the quiescent center, the ground tissue stem cells and to a lesser extent in mature cortex and endodermis cells. {ECO:0000269|PubMed:17785527}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that, together with BIB, regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:17785527, PubMed:25829440). Binds DNA via its zinc fingers (PubMed:28211915, PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Required for radial patterning and stem cell maintenance (PubMed:17785527). Counteracted by 'MAGPIE' (MGP) (PubMed:17785527). Binds to the SCR and MGP promoter sequences (PubMed:21935722). Controls position-dependent signals that regulate epidermal-cell-type patterning (PubMed:20356954). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:20356954, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:28211915}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Not regulated by SCR and SHR. {ECO:0000269|PubMed:21935722}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM457679 | 0.0 | AM457679.2 Vitis vinifera contig VV78X050744.10, whole genome shotgun sequence. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP95 | 16 | 242 |
| Publications
? help Back to Top |
- Moreno-Risueno MA, et al.
Transcriptional control of tissue formation throughout root development.
Science, 2015. 350(6259): p. 426-30
[PMID:26494755] - Hirano Y, et al.
Structure of the SHR-SCR heterodimer bound to the BIRD/IDD transcriptional factor JKD.
Nat Plants, 2017. 3: p. 17010
[PMID:28211915] - Kobayashi A,Miura S,Kozaki A
INDETERMINATE DOMAIN PROTEIN binding sequences in the 5'-untranslated region and promoter of the SCARECROW gene play crucial and distinct roles in regulating SCARECROW expression in roots and leaves.
Plant Mol. Biol., 2017. 94(1-2): p. 1-13
[PMID:28324206] - Long Y, et al.
In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
Nature, 2017. 548(7665): p. 97-102
[PMID:28746306] - Bustillo-Avendaño E, et al.
Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
Plant Physiol., 2018. 176(2): p. 1709-1727
[PMID:29233938]
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