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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GSVIVT01025562001 |
| Common Name | LOC100256868, VIT_08s0040g03070 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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| Family |
WRKY |
| Protein Properties |
Length: 439aa MW: 47992.2 Da PI: 9.2194 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01025562001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 103.3 | 1.3e-32 | 196 | 252 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d+++ ei+Y+geHnh+k
GSVIVT01025562001 196 DGYNWRKYGQKQVKGSEYPRSYYKCTYPSCPVKKKVERSL-DGQIAEIVYKGEHNHSK 252
9***************************************.***************85 PP
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| 2 | WRKY | 103 | 1.7e-32 | 357 | 414 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
Dg++WrKYGqK+vkg+ +prsYYrCts +C+v+k+ver++edp +++tYeg+Hnh+
GSVIVT01025562001 357 GDGFRWRKYGQKVVKGNSYPRSYYRCTSLKCNVRKHVERASEDPGSFITTYEGKHNHD 414
5********************************************************7 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009957 | Biological Process | epidermal cell fate specification |
| GO:0010214 | Biological Process | seed coat development |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 439 aa
Download sequence Send
to blast |
MEIKESERIV VAKPVASRPT CSSFRSFSEL LAGAINASPP TPCPETSFAA IRPKTVRFKP 60
VANRAPIGVV SSQAQVSGTE VCNSSDKVLK SDSKPTVVYK PLAKLVSKTT VSLLANLGSS 120
NMSHQQTLAQ VEARVQPPNQ DRQHSRPHLS SNLHQTFPSQ EETDRTSEPS KTASQNLEED 180
QKPLLPSSNG DRPSYDGYNW RKYGQKQVKG SEYPRSYYKC TYPSCPVKKK VERSLDGQIA 240
EIVYKGEHNH SKPQPPKRNS SGTLGQGFVS DGTGKAPLNY DSGTTGALKA GGGTPDNSCG 300
LSGDCEEGSK GLEPEEDEPR SKRRKSENQS SETVIVGEGA QEPRIVVQNS TDSEILGDGF 360
RWRKYGQKVV KGNSYPRSYY RCTSLKCNVR KHVERASEDP GSFITTYEGK HNHDMPTRNT 420
NAATSEPDMQ AHTNKEKP*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Leaf promordia, trichomes, atrichoblasts, fertilized eggs, seed coat. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM448329 | 0.0 | AM448329.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X192910.7, clone ENTAV 115. |
| Publications
? help Back to Top |
- Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
Bioinformatics, 2012. 28(6): p. 815-22
[PMID:22271267] - Simon M, et al.
Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
Plant Cell, 2013. 25(9): p. 3175-85
[PMID:24014549] - Ranocha P,Francoz E,Burlat V,Dunand C
Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
Plant Signal Behav, 2014. 9(11): p. e977734
[PMID:25531128] - Verweij W, et al.
Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
Plant Cell, 2016. 28(3): p. 786-803
[PMID:26977085] - Gonzalez A, et al.
TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
Dev. Biol., 2016. 419(1): p. 54-63
[PMID:27046632] - Hassani-Pak K, et al.
Developing integrated crop knowledge networks to advance candidate gene discovery.
Appl Transl Genom, 2016. 11: p. 18-26
[PMID:28018846]
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