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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01025548001 | ||||||||
Common Name | LOC100244807, VIT_08s0040g03180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | AP2 | ||||||||
Protein Properties | Length: 496aa MW: 54335.8 Da PI: 6.4064 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54 | 4.3e-17 | 150 | 199 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g GSVIVT01025548001 150 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 199 78*******************......55*************************98 PP | |||||||
2 | AP2 | 42 | 2.3e-13 | 242 | 292 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g GSVIVT01025548001 242 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 292 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.7E-9 | 150 | 199 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-16 | 150 | 208 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.10E-12 | 151 | 209 | No hit | No description |
SMART | SM00380 | 2.5E-32 | 151 | 213 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-17 | 151 | 208 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.912 | 151 | 207 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-16 | 242 | 301 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.4E-9 | 242 | 292 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.61E-25 | 242 | 302 | No hit | No description |
SMART | SM00380 | 1.5E-31 | 243 | 306 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-15 | 243 | 300 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.514 | 243 | 300 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-6 | 244 | 255 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-6 | 282 | 302 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MLDLNLNDVS DDSFHGSTQA VDPGKLLDLS SNQMEDSGSF NSSIVNADAL SSTTADDDSS 60 SNHLDHCCGI VAFSFDFFKQ NEDHDNKSSD SVTRQFFPVT SGGEGDCSLG SSLQHPCILQ 120 VGSGGPLLPK KPQQQQQVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD CGKQVYLGGF 180 DTAHAAARAY DRAAIKFRGA DADINFAVSD YDEDIKQMSN FTKEEFVHVL RRGSTGFSRG 240 SSKYRGVTLH KCGRWEARMG QFLGKKYIYL GLFDSEIEAA RAYDKAAIKC NGREAVTNFE 300 PSTYEGEIIF PADNGGSSQN LNLLPNLDLH LGVAPYFSDE PMSDEPVRNS KANGSPSRQG 360 HDAMPDDRGE RIENSTSATL GVHPSYGLVM ASDHPPSWSG VNSRVFPIYK ERAIEKRIEV 420 DHLPNWAWQN HGPYGGATPP LFSTAASSGF LSSVTTASPA NPTQGSLQST TVLQHYYSPS 480 LTNTTSISPY YYCRS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.14265 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First detected in the boundary region of the shoot apical meristem (SAM) and the surrounding sheath. Expressed at low levels in vegetative organs, mostly in the sheaths. In inflorescence tissues, observed in the branch meristem and spikelet meristem regions, as well as in their vasculature and surrounding sheath (PubMed:17144896). Accumulates in incipient rudimentary- and empty-glume primordia (PubMed:22003982). Highly abundant in young developing panicles, but becomes later present at low levels in developing panicles and seeds. Found primarily in the boundary region of glume primordia (PubMed:17144896). {ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982}. | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in seedlings and developing panicles (PubMed:17144896, PubMed:20017947, PubMed:22003982). Mostly expressed in newly emerging spikelet meristems and, at low levels, in shoots, roots, panicles, mature spikelets and sheaths (PubMed:17144896). {ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM488107 | 0.0 | AM488107.2 Vitis vinifera contig VV78X184178.58, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002273339.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2 | ||||
Swissprot | Q8H443 | 1e-99 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | D7TQA3 | 0.0 | D7TQA3_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0040g03180.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP497 | 17 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 5e-85 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01025548001 |
Entrez Gene | 100244807 |
Publications ? help Back to Top | |||
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