PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025226001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB_related
Protein Properties Length: 756aa    MW: 83507 Da    PI: 6.6953
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025226001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.2e-09438485448
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                        WT  E  +l+++v q+G g+W+ I r +    ++Rt  ++k++w+++l
  GSVIVT01025226001 438 WTLSEVMKLIEGVSQYGVGRWTEIKRLLFsssTHRTSVDLKDKWRNLL 485
                        **********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-12430488IPR009057Homeodomain-like
PROSITE profilePS5129414.88430489IPR017930Myb domain
SuperFamilySSF466896.68E-16432492IPR009057Homeodomain-like
SMARTSM007172.4E-10434487IPR001005SANT/Myb domain
PfamPF002497.7E-7437485IPR001005SANT/Myb domain
CDDcd116601.21E-19438486No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MFCGGNRTSA EGNGSLFTYP EDEGIGVEYL LAEPKCNNLV DDVLGFETLN PQKFFSVGDF  60
SHAVENDQRK IDGDAQDSNF TREEEHASLE FLDGMLEGTE GVLQGMNKVP CSCEDFLLDT  120
KLADPVPNLE HGPCGGSSFG NLGLESPSSS FNGRDSGVKY TYNQNSSLHD NMTIHGLHED  180
FKNIFGGGTS IKDKQWLKLH ISFGLQNLVE LDNGLNLLKQ GVTFNENEAK SNFSSRNEFC  240
SSAFISFSSV VNDKTVSGRQ QVKNDSLQTL SSDDNRVGFC ILDSGEKDLL VTQKRLRKPT  300
RRYIEEPSEQ KGKYHSRKCG ISYKRSRDKF PHVGSHEQHR QAGFGASSLD CQQEFFEGAC  360
IQVPFGLPVQ EGCSKRNTSI LGCQESEDCK DSGSLVPNEI SEMEPFPAES QDDMSEDDCI  420
TIINTQKGRS RRKHHMLWTL SEVMKLIEGV SQYGVGRWTE IKRLLFSSST HRTSVDLKDK  480
WRNLLRASCT RLHNKREVEQ GRKHASHQIP QSVLGRVREL ALIYPYPRGR KSKDTCTPVV  540
SPIPSSTGKL VPMSTAVKGA KRVTFSATST GKESFSLLST HLLNLPSLPS VSSIAALAVS  600
ITDVRLNSPV VLSNLYFNGS SPDKSSRITT PNAYTSDCCV ATPVDWNSGD MYPLTPSNCI  660
ALLFLILVGF AAQLGRSKMA YLGVVQTYAQ SSIVVDVIET ISEIRGDLHS RNPSRQHSEV  720
RVPLCRVCLI FPFVHFLSPA DQWILVLCNF ASSSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4272110.0AM427211.2 Vitis vinifera contig VV78X046097.11, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651205.10.0PREDICTED: uncharacterized protein LOC100853565 isoform X3
TrEMBLF6GU260.0F6GU26_VITVI; Uncharacterized protein
STRINGVIT_06s0004g02520.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-42TRF-like 6